Preg029162.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phormia regina
Gene Symbol
sip1
Assembly
GCA_001735585.1
Location
MINJ01182772.1:18827-21723[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1 1.9e+04 -4.1 0.1 200 219 251 269 242 283 0.46
2 3 3.5e-97 6.5e-93 312.3 15.5 1 275 420 690 420 690 0.99
3 3 0.84 1.5e+04 -3.8 0.0 246 261 706 721 699 735 0.57

Sequence Information

Coding Sequence
atgTCTGATAATGAATATGAACGCTTTGAAATAACCGATTATGATTTGGACAATGAATTCAATCCAAATAGGCCCAGAAAAAAGCAaaccaaacaacaacaaatttatgGCATTTGGGCGGATGATAGCGACAATGATGACGAGGGAGAATCTTCTGGACGAAGACGTGGTGGTCGTAAAGGTCGTATGGGCTTGGGATCCTCCGGCGGCCGTAGTAAAGATTATACAGCTCCAGTAAGTTTTGTAGCCGGTGGCATACAACAGTCGGGCAAGAAAAAGgataaaaagaaagaagaagaCGAAGAGGACAAAGAAAATCCCATAACCGATGAGGAGGATGAAATTAATGCTCGTCCTGGATTTGGTATAGGAGCCAGACCCACTTTGATGGATGTAGATTCGGCTCATACAAGCGAAGATTCGGAGGAGGAACAGGAGAGCAGAAAACCTCAGCAAAGTCAACAGAAACCCTCCTATTTTAAACACAATCAAGTGGGCAGTTCTAATGTTGGTGCTTGGGAACAACATACTCGTGGTATAGGTGCCAAATTGTTATTGCAGATGGGTTATAAGCCAGGCAAAGGTTTGGGTAAAGATTTACAGGGTATATCACAGCCAGTGGAAGCTCATGTACGTAAGGGTAGAGGTGCTATAGGTGCATATGGTCCCGAAACGGCTGCCAGTGTGGGTGGTAAAGGGcataaacCCCAAATAGATGAAGATGTGAGGGAGGCCAAGGAGTTTAAGGAGAAGCTTAACAAGTGGAAAAAAGCTGGTGATACGAAACAAGACAAATCTACGAAACGTTATTATTACAAATCTGTAGAGGAGGTTTTGGAAAAAGGGAAAAgttctaattatattattagCGATAAAATTAGTAAAAAACTTGGCAATGTTCCCGTCATCGATATGACTGGCCCCGAAAAACGTGTCCTTAGTGGTTATCATGCCATTGCTCAATCCAAAGTTATAGATGAAGATTTGTATGACCTAAATGAGCAGCCCAAAAAATCTGCTACTTCATTTGCTTTACCCGAACTTATGCACAATCTTTCGCTTATAGTCAATATGTGTGAGCAAGACATTATATCCCTGGATTCCGCCCAAAATACTGCCAGTGAAAGACAAGTATCACTCGAACAAGAAAAGAAACAGCTCGAAGAAATTGTCAAACTAGAAAGTGATCATATTAACACTTTAGATAAAGTTCTAGCGTTAGTAGATGAACTGACCAGCAATGAATCGGATTTAAATTTGGAACGTgcagaaaaaatattcctaGAATTGCAGCAAAATTATGCTTCCGAGTATAAACAATTTGGTTTGGGAGATTTAGCAGCTGGAATAATAGCTCCTTTGTTGAAAAATCATCTAAGTGAATGGAAACCTTTGGAGAATCCCACATTATATGTGGATCTAATCAAGAAATGGCGTTCGATTTTAGAAAGTCAAAATGACTCCCAAACTGAAACACGTTCGAATATATTTGATCCTTATTCCTCATTAGTATGGGCTGGTGTAATACCCAGCTTCCGTTCTTGTGCTGAATTTTGGGATCCTAAACATCATCAGTCTATGGCTGCTCTTTTGGATTGTTGGGCTCCTCTATTTCCCACTTGGATATTGGATTCTGTTTTAGAACAGCTGATATTGCCACGTTTAAGCACAGCCGTACGTAATTGGGATCCTCTTACGGATACTGTACCCATTCACATATGGATTTTACCTTGGAATTCTATTTTGGGTCATAAAATGGAAGAATTTATTTTCCCCACTATAAGAGAAAAATTGGGTAATGCTTTACAGGCCTGGATGCCACAAGATCGTTCGGCAAGAGCCATGTTAACACCCTGGAAGGGAGCATTTGATGAGAGTGAAATGCAAGTATTTCTACTGCAGCATATTATACCAAAGTTACAAATGGTTTTAACAGAATTTGTTATAAATCCTTTGCAACAGGATTTGGAACCCTGGAATCAAGTTTGGGAATGGCATGAAGTTATACCCACCATACAAATGGCTCAacttttagataaatatttctttcccAAATGGATGCAAGTACTTGTTTTATGGCTTAATCAATCACCAGACTATAGTGAAATATCACGTTGGTATTCTGGCTGGAAAAGTATGTTCTCCGAGGAGATTCTCAGAGAACCCAATATAAAAGAACATTTACGTCGTGCTTTAGAAATAATGCATCGTGCTACTGATCAAATATCAACTGTTTCACCGCTTAATACAGCCGCAAATATTGGTGCCAATATAACAGCTACACCTGTACCACCACCGCCACAACCACCACCACCTCCTTCACTTTTGGATATACAAGTACCAACTCCCACACAATTAGACTTTAAAGAATTGGTTTCACGAAAATGTGCTGAAAGAGGTGTATTATTTGCTCCACTTCCAGGACGAAGAGAATTGGGCAAACAAATTTATCGTGTGGGcaaattatattgttatatcGATCGTAATGTTTGTATGTTAAGTGAtagtacttttaaaaattggttACCCACACCATTGCAGCCCATGATCGAGAGAGCTATAACGGGTATTATGAATTAG
Protein Sequence
MSDNEYERFEITDYDLDNEFNPNRPRKKQTKQQQIYGIWADDSDNDDEGESSGRRRGGRKGRMGLGSSGGRSKDYTAPVSFVAGGIQQSGKKKDKKKEEDEEDKENPITDEEDEINARPGFGIGARPTLMDVDSAHTSEDSEEEQESRKPQQSQQKPSYFKHNQVGSSNVGAWEQHTRGIGAKLLLQMGYKPGKGLGKDLQGISQPVEAHVRKGRGAIGAYGPETAASVGGKGHKPQIDEDVREAKEFKEKLNKWKKAGDTKQDKSTKRYYYKSVEEVLEKGKSSNYIISDKISKKLGNVPVIDMTGPEKRVLSGYHAIAQSKVIDEDLYDLNEQPKKSATSFALPELMHNLSLIVNMCEQDIISLDSAQNTASERQVSLEQEKKQLEEIVKLESDHINTLDKVLALVDELTSNESDLNLERAEKIFLELQQNYASEYKQFGLGDLAAGIIAPLLKNHLSEWKPLENPTLYVDLIKKWRSILESQNDSQTETRSNIFDPYSSLVWAGVIPSFRSCAEFWDPKHHQSMAALLDCWAPLFPTWILDSVLEQLILPRLSTAVRNWDPLTDTVPIHIWILPWNSILGHKMEEFIFPTIREKLGNALQAWMPQDRSARAMLTPWKGAFDESEMQVFLLQHIIPKLQMVLTEFVINPLQQDLEPWNQVWEWHEVIPTIQMAQLLDKYFFPKWMQVLVLWLNQSPDYSEISRWYSGWKSMFSEEILREPNIKEHLRRALEIMHRATDQISTVSPLNTAANIGANITATPVPPPPQPPPPPSLLDIQVPTPTQLDFKELVSRKCAERGVLFAPLPGRRELGKQIYRVGKLYCYIDRNVCMLSDSTFKNWLPTPLQPMIERAITGIMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00975603;
90% Identity
iTF_00258873;
80% Identity
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