Psen006751.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01000729.1:9899-13082[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0024 0.17 12.5 5.3 2 23 147 169 146 169 0.96 2 17 2.8e-05 0.002 18.6 1.1 1 23 178 201 178 201 0.96 3 17 0.024 1.7 9.4 0.8 2 23 214 236 214 236 0.97 4 17 0.00047 0.033 14.7 1.9 1 23 245 268 245 268 0.97 5 17 0.00035 0.025 15.1 1.4 1 23 280 303 280 303 0.96 6 17 0.00026 0.018 15.6 1.1 3 23 333 354 331 354 0.95 7 17 8.7e-05 0.0062 17.0 1.3 2 23 364 386 363 386 0.97 8 17 0.022 1.5 9.5 1.2 2 19 391 408 390 410 0.94 9 17 0.001 0.073 13.7 0.3 2 21 416 435 415 438 0.94 10 17 0.0052 0.37 11.4 1.5 3 23 448 469 447 469 0.95 11 17 0.00097 0.068 13.8 3.3 1 23 474 497 474 497 0.94 12 17 0.0035 0.25 12.0 0.7 2 23 508 530 507 530 0.89 13 17 5.8e-05 0.0041 17.6 0.8 1 23 553 576 553 576 0.94 14 17 1.7 1.2e+02 3.5 0.0 2 23 583 604 582 604 0.85 15 17 0.077 5.4 7.8 0.9 2 23 610 631 609 631 0.97 16 17 0.055 3.9 8.2 0.1 1 23 697 719 697 719 0.96 17 17 0.14 10 6.9 2.0 1 23 725 748 725 748 0.96
Sequence Information
- Coding Sequence
- ATGACAGATAAAGTTGAAATGAAAACGGAATTAGATCAACGTAAGGATCCTACTCTACTCTTGCCGGAAGAGCCTATGTCCTATGAGATAAAACCTAAAAAAAAGAAGAAAAAGAAAAAGCAAGAAGATCCGTTTAAAGATATTGAAGAAACAATCAAATTGCCAACTGTCACTATATTTGATCCATCATCCGATTCTGTGTTGGATCCAGAAGTTAATATAAAAGTAGAAAATATAGAAGTGGAGTTGGATTTTAATGATTTTGCACATGATAATGGATTAATGGTTGAGGGTACATATAGTGAGAATAGCCAACCGGAACCAATAGTTAAATTAGAACAAGATAATAAAGAAGCTACCTTACTTACATTTGAAAACATCATTAATGATAAAACAATTCTTCAATACGGAACCGAAAATGCAGCTGCCCCCAACTGTGTTTGCAAAGTGTGCCATCTAGTCTTTCAAACGCCAAAAACTTTACGAATGCATCAGAAAAGGAAGCACAAAGCGTTCAGAAAGTCATTTAAGCATATATGTGATTATTGTGGTATGTCATACGAAACGAAAAATAGTTTAGTTGCTCATATTAAAAGGAAACATGGTCCGAATTCTACGCCTGATGATAGAGAGGAGAGAACCTGCGATGTATGCGCTCTAGTCTTTAAAGGCATGACAAGGTTACGCATGCATATGCGGAGAAAGCATGGCTCTTTTGAAGAGTCATTCAAGCATGTTTGTGAAGACTGTGGACTAACATACGATAAGCATAGAAGTTTGATAGTACATATACAAAGAAAACATGCGCAAAAAGTCAAACCAGACACAGATCAATGGTTTAATTGCCCATTTTGTCCTAAAGGTTTCAACAAAAGAGAAACTTATGTCAGACATGTTCAAAGAAAACATAGAGTAAATGATGAAGAAACTGGCAAGAATGAAGATTTTCCACAAGAAATGGCAAATATTGAAAGCACTGAAACAGGAGAAATATGCTGCGCAGAATGTCCTTTAGTGTTTTCTTCTATAACTTATCTAAAATTACATATGAGACGAAAACATAATGCCTTAAAGGAGGATTTTCGGTTGAAATGTAAAATATGCAACTTGTCTTATGACAAAATAGAAAGTCTCAAACGCCATATTCGAAGAAAACACGATAAAAGGTCATATTGTGATGTGTGTAACAAACAATTTGATACACGGGAACAGTACTTAAATCATAGCCACGGAAAAATGATACAGGAATGTTCAATTTGTGGGCTAATATTTGCATCCCCTAGTGGTCTAGGTAAACATTTAAGATGTACGCACAAAATCGTTCAACCGAAGACAGTCTTCTGTCATATTTGTAACGAAGGATTTAATGATAAACGTCAATTAAAACCACATTACTTAAGGGTTCACTTAAACATCTCATATACATGTAGGTTTTGTAAAAAAGTTTTTAAAGCGAAAGAAAGCTACCGACGCCATATTATTTTCAAACATCAAAACAGCCGTCCGAAAAGTGAATTGCAGACTTGTGACCAATGCTCTGAAACATTCTCAGATGAATTTGAGCTTAGTCGCCATTTTGATTTAACACATAGATCAGATGGTATGGAAGGACCAAAAGTTGTTATAAAAAAAGAAGAGCTAGAAATACACAATTCATTCCAGTGTACAAAATGCCCAGAAAATTATACATCCTGGGATCAATTAAGGTTGCATTATGAACAAAACCATTATATGGTTACTGAAACACAGTGCCAAGTTTGCGGTGAAATCGTGCCGGGCAACGAATTACAAAAGCATATAAAAGATGCGCACACAGATAATAATATGAAGTGTAGATTTTGTGAATTTGTTACTGATAATAGAGCGAGTATGACTCAGCATATATTAAGGCATAAAAATGCAACGACGTTACATTGCACCTTTGCGAATTGTAAATATAAGACTTACTATGAGGTTGCAATGGAGAAGCATAAACAAAAGCATGTAGATCAGGGTGTAAAATTGCAGTGTACCCAGTGTCCATTCCAAACGATGAATAAGTATATTTTAAAGTATCACGAGGAAGCTCATACGACAGGAAAGAAAAAGTATGCCTGTGATCAATGCGACTATGCCACTGTGTTACCGGCAAGTTTAGTTCAACACAAGTACAAACATTCCACAGAAAAGAGATTTAAATGTGAGGTGTGTCCGTTTGCTACGAAGTACAATACGTCGTTACGTTTTCATGTTAAGAAAAAACATTGTGATCTCCCATCTTAA
- Protein Sequence
- MTDKVEMKTELDQRKDPTLLLPEEPMSYEIKPKKKKKKKKQEDPFKDIEETIKLPTVTIFDPSSDSVLDPEVNIKVENIEVELDFNDFAHDNGLMVEGTYSENSQPEPIVKLEQDNKEATLLTFENIINDKTILQYGTENAAAPNCVCKVCHLVFQTPKTLRMHQKRKHKAFRKSFKHICDYCGMSYETKNSLVAHIKRKHGPNSTPDDREERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHVCEDCGLTYDKHRSLIVHIQRKHAQKVKPDTDQWFNCPFCPKGFNKRETYVRHVQRKHRVNDEETGKNEDFPQEMANIESTETGEICCAECPLVFSSITYLKLHMRRKHNALKEDFRLKCKICNLSYDKIESLKRHIRRKHDKRSYCDVCNKQFDTREQYLNHSHGKMIQECSICGLIFASPSGLGKHLRCTHKIVQPKTVFCHICNEGFNDKRQLKPHYLRVHLNISYTCRFCKKVFKAKESYRRHIIFKHQNSRPKSELQTCDQCSETFSDEFELSRHFDLTHRSDGMEGPKVVIKKEELEIHNSFQCTKCPENYTSWDQLRLHYEQNHYMVTETQCQVCGEIVPGNELQKHIKDAHTDNNMKCRFCEFVTDNRASMTQHILRHKNATTLHCTFANCKYKTYYEVAMEKHKQKHVDQGVKLQCTQCPFQTMNKYILKYHEEAHTTGKKKYACDQCDYATVLPASLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01562189; iTF_00357881; iTF_00358855; iTF_00711193; iTF_00710406;
- 90% Identity
- -
- 80% Identity
- -