Eman004473.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01001800.1:13403-15813[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00027 0.024 15.7 3.1 1 23 138 161 138 161 0.98 2 18 1.6e-05 0.0014 19.6 1.4 1 23 170 193 170 193 0.96 3 18 0.08 7 7.9 0.6 2 23 206 228 206 228 0.96 4 18 0.0042 0.37 11.9 3.7 1 23 237 260 237 260 0.96 5 18 3.6e-05 0.0031 18.5 1.1 1 23 272 295 272 295 0.97 6 18 3.4e-05 0.003 18.5 0.3 2 23 321 343 320 343 0.97 7 18 0.00011 0.0092 17.0 1.4 2 23 353 375 352 375 0.97 8 18 0.064 5.6 8.2 0.8 2 19 380 397 379 399 0.93 9 18 0.00043 0.038 15.1 0.4 2 21 405 424 405 427 0.94 10 18 0.00046 0.041 15.0 0.2 2 23 436 458 435 458 0.94 11 18 0.00032 0.028 15.5 3.5 1 23 463 486 463 486 0.94 12 18 0.00039 0.034 15.2 0.2 2 23 497 519 496 519 0.96 13 18 0.00015 0.013 16.5 0.9 1 23 542 565 542 565 0.94 14 18 0.29 26 6.2 0.1 2 23 572 593 571 593 0.90 15 18 0.044 3.8 8.7 1.2 2 23 599 620 598 620 0.97 16 18 0.38 34 5.8 0.6 2 23 658 679 657 679 0.91 17 18 0.014 1.2 10.3 0.3 1 23 686 708 686 708 0.97 18 18 0.16 14 6.9 2.0 1 23 714 737 714 737 0.96
Sequence Information
- Coding Sequence
- ATGACCGATGTAAAATCAGAAAATGTCTCTACAAGAAAGGACCCAACTTCTCTCCTACCTGAAGAAGCCATGtcatatgaaataaaaccaaaaaagaagaaaaaaagaaaaacccAGGAGGACCCGTTCAAAGACATCGAAGAAAGAATAAAACTACCAACTGTCACAGTTTTTGATCCATCATCTGAATCCATATTGGATCCAGAAGTTAGTATTAAGGTGGAAAATATTGAAGTGGAGTTGGATTTTAATGattttgcAAATGATAATGAGTTATTGGTTAATAATGAAGACAGCCAACCAGAACCTATAGTTAAATTAGAGCAAACTAACAAGGAAGCCACTTTACtgacatttgaaaatattatttacgataAACCAATAGCATCTGTTAATGGTATCGCTCCCAACTATGTTTGTAAATTGTGCCACCTAGTCTTTCAAACCCCAAGAACTCTTCAAATGCACCAGAAGAGAAAACACAAAGTTTATAGGCGATCATTCACACATATTTGTGACTATTGTGGAATGTCCTATGAGACTAAAAATAGCTTAGTTGCTCATATGAAGAGGAAACACGGACCAAATGCTACACCTGATGACAGAGAGGAAAGGACGTGCGATGTATGTGCGCTAGTGTTTAAAGGGATGACCAGGTTACGTATGCATATGCAAAGAAAGCATGGCGCTTTTACAGATACTTTTAAGCATGTGTGTGAAGATTGCGGACTTACATATGACAAGCATAGGAGTTTAATCGTTCATATACATAGAaaacattcaaacaaaatagtaCCTGTGTCTGACCAGTGGTACAGTTGCCCATTTTGCCCGAAAGGTTTTAATAGAAGAGAAACTTATGCCAGACATGTACAAAGAAAACATCGGATGAATGAAGATGGTCCTCCTAATAATGATGAAGTACAAATAAATGGAGAGCCTACGGAATCCGGGGAAATTACTTGTGGTGAATGTCCATTAGTGTTTTCTTCTATGAATTACCTACGATTACACATGAGGACAAAACACAATGCTCTCAAAGATAATTTCAGATTAAAGTGCAAGATATGCAATTTGTCATATGAAAAAATTGAAAGTCTTAAACGTCACATACGAAAGAAGCACGACAAAGGATCATATTGTGAAGTTTGTAACAAACAGTTTGAGACGAGAGAACTCTATTTGAGTCACTCACATGAAAAATTAGTAAGAGAATGTCCAATATGTGGGCTTATCTTTGCTTCTCAAAGTGGTCTAGGTAAACATTTACGATGCACGCACAAAATTGTTGAGCCGAAAACGGTGACCTGTCCAATATGCAACGAAGGGTTTTCTGACAAACGTCAGTTAAAGCCACACTATTTAAGGGTACACTTAAATGTGTCTTAtacttgtaaattttgtaagaaGGTATTTAAAGCGAAAGAGAGTTATAGACGTcatatcatatttaaacatagaaaCAATAAGCCTACAGGTGAATTTCAAACATGTGATCAGTGTTCTGAGACTTTTCCAGATGAGTTTGAGCTTAGCCGACATATTGACACAGTTCATACACAGGGTGATAGTGGGGAaacaaatgttattgttaagaAGGAAGATGTGGAGATACCCAATTCATTCCAATGCACAAAATGTCCTCAAAATTATACCTCATGGAATGAGTTGAAAATACATTACGAACAAAACCATTACATGCCTACAGAGTCACAGTGCCAAGTTTGTGGTGAAATAGTACCTGATAATGAATTACAGAAGCATATGAAAAATGTgcatattgataaaaatatgaagtGTAGATACTGCGAATTTGTTAGTGACAATCGTACGAGTATGACTCAACATATTTTGAGGCATAAAAATGCGACAACATTGCATTGTAATTTTGCTAATTGTAAGTATAAGACGTTTTATGAGGGTGCCATGGATAAGCATAAGAGGAAACATTTGGATCAGGGTGTTAAGTTACAATGTAGTCAGTGTCCGTTTCAAACGATGAATAAGTATTTGCTGAAGTATCATGAAGATGCGCATTTAAcaggaaagaaaaaatattcctgTGATCAGTGTGATTATTCCACTGTGTTACCTGCCAGTTTGGTTCAACATAAATACAAGCATTCCAcagaaaaaaggtttaaatgtGAGGTGTGTCCGTTTGCTACTAAGTACAACACCTCATTGCGTTTTCATGTGAAGAAGAAACATTGTGATCTCCCAtcttaa
- Protein Sequence
- MTDVKSENVSTRKDPTSLLPEEAMSYEIKPKKKKKRKTQEDPFKDIEERIKLPTVTVFDPSSESILDPEVSIKVENIEVELDFNDFANDNELLVNNEDSQPEPIVKLEQTNKEATLLTFENIIYDKPIASVNGIAPNYVCKLCHLVFQTPRTLQMHQKRKHKVYRRSFTHICDYCGMSYETKNSLVAHMKRKHGPNATPDDREERTCDVCALVFKGMTRLRMHMQRKHGAFTDTFKHVCEDCGLTYDKHRSLIVHIHRKHSNKIVPVSDQWYSCPFCPKGFNRRETYARHVQRKHRMNEDGPPNNDEVQINGEPTESGEITCGECPLVFSSMNYLRLHMRTKHNALKDNFRLKCKICNLSYEKIESLKRHIRKKHDKGSYCEVCNKQFETRELYLSHSHEKLVRECPICGLIFASQSGLGKHLRCTHKIVEPKTVTCPICNEGFSDKRQLKPHYLRVHLNVSYTCKFCKKVFKAKESYRRHIIFKHRNNKPTGEFQTCDQCSETFPDEFELSRHIDTVHTQGDSGETNVIVKKEDVEIPNSFQCTKCPQNYTSWNELKIHYEQNHYMPTESQCQVCGEIVPDNELQKHMKNVHIDKNMKCRYCEFVSDNRTSMTQHILRHKNATTLHCNFANCKYKTFYEGAMDKHKRKHLDQGVKLQCSQCPFQTMNKYLLKYHEDAHLTGKKKYSCDQCDYSTVLPASLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01193786;
- 90% Identity
- iTF_00710406;
- 80% Identity
- -