Psen014427.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_001586405.1
- Location
- LQNK01000861.1:171008-175760[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-67 2.7e-63 214.1 17.5 20 297 1 260 1 263 0.89 2 3 2 1.9e+04 -7.2 14.0 1 43 259 301 259 322 0.65 3 3 2 1.9e+04 -6.3 10.1 137 232 299 331 280 338 0.38
Sequence Information
- Coding Sequence
- ATGCGGGAGCTGGAGCGGCAGCAGAGGGAACAGGAGGACCATGCCGACAAGGCCTACGATATGTATGCAGAGACTGTGGGACGTCGTGGTGGCACCAGGCTAGCGGCGCTCAGCCCGGGCGGGTTACACTCGCCCAGGAGAAGCTCAGAGGATTCGGATGAAGTGCTTAGTATTAAGGACTTAAGGCACGAATTAAAAGAAGTAGAGGAGAAGTTTCGTAAGGCGATGATATTAAATGCTCAACTGGACAATGATAAGGCCGCGCTCGGTTACCAGTTGGAGTTGCTCAAGGATAGAATAGAGGAATTACAAGAAGAATACGCGCAATTACAGCGTGAACATAAAGAGAAATGCTCATCTCACGAGCGGTTGAAACGCGAGCATGCAGCGTTGGAGCGCGAGCTGAACGCTGCGAGAGATGCGGTCCGGGCGCGAGACGCGGCCGCGGCGGAGGCTGGGTTCGCGTTCGTTGACGCGGGGGACACGTCGGCGAGCGGCGTGGGGGTGGTGCCCGCGTTGGCGCTGGTGTCGCACCAGTCGCAGGCGCTGTTGGAGGACGGGGGGGAGGGAACCCTTGATGTCCGGTTGCAGAAGCTGGTGAACTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTCACGCTCAACGAGGAGCGCGCCGCGCGGCAGAATGGAGTGGCGTCGCATCATGACCAGGATTATGAGAATGAAGTGGAGACGCTACGGAAGTCAGTGTCGGAGGCGAAGGGGCGAGCGGCGAGGGCGGAGGCCGAGGCGGCGCTGCAGGCCGGAGCCGTGGCGCGACTCGAGGCGCAGCTGCAGCGTCTGCGCGCGCACCACGAGCAGCAGGACGAGCGCGAGCAGCTGCTCAAGCAGGAGCGGCGCCGCCTGCAGCGGGAGGCTCGGGAAGCCCTCAATCGAGTCGAAGAGTTGGAGACGGAGAACAGCCACCTGACGAAGCGTTTGGACAAGCTGAAGAACGCCAAGTCAGCGCTCCTCAAAGAGCTGTGA
- Protein Sequence
- MRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPGGLHSPRRSSEDSDEVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHAALERELNAARDAVRARDAAAAEAGFAFVDAGDTSASGVGVVPALALVSHQSQALLEDGGEGTLDVRLQKLVNSKQALESEVRKLKLTLNEERAARQNGVASHHDQDYENEVETLRKSVSEAKGRAARAEAEAALQAGAVARLEAQLQRLRAHHEQQDEREQLLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00710225;
- 90% Identity
- -
- 80% Identity
- -