Parg007308.1
Basic Information
- Insect
- Phlebotomus argentipes
- Gene Symbol
- Prdm14
- Assembly
- GCA_947086385.1
- Location
- CAMTYR010000037.1:3477536-3481339[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.3e-06 0.016 14.8 0.4 22 48 88 114 85 119 0.92 2 15 0.27 6.6e+02 0.0 0.1 23 44 123 143 116 153 0.79 3 15 0.033 83 2.9 0.1 19 43 175 199 168 204 0.86 4 15 0.35 8.6e+02 -0.3 0.2 22 48 208 234 204 239 0.87 5 15 2.6 6.4e+03 -3.1 0.0 25 47 245 267 240 273 0.68 6 15 2.5 6.1e+03 -3.1 0.0 26 49 274 297 265 299 0.78 7 15 1.5e-08 3.7e-05 23.2 3.8 16 48 376 408 374 411 0.96 8 15 0.22 5.5e+02 0.3 0.3 16 32 466 482 461 497 0.74 9 15 0.0033 8.3 6.1 0.3 25 46 505 526 496 530 0.85 10 15 0.042 1.1e+02 2.6 0.0 21 44 609 632 606 640 0.87 11 15 1.6 4e+03 -2.5 0.0 25 49 674 698 672 700 0.75 12 15 0.002 4.9 6.8 0.3 23 51 700 728 694 731 0.89 13 15 0.0035 8.7 6.1 0.1 20 52 730 762 727 763 0.87 14 15 0.57 1.4e+03 -1.0 0.1 30 48 798 816 792 820 0.69 15 15 0.096 2.4e+02 1.4 0.1 26 48 855 877 846 879 0.88
Sequence Information
- Coding Sequence
- ATGGAAATAAAAATTGAGAAAGAGGATCCCGATTACTCATATCAGCCTGAGACATTGTTTGTGAACTGCGATAATGTGAAGGAAAACTATGCGCTTCAGGACATTAAAGAAGAGCCTGTCGACGAGAGCTTTAAGATTGCGTCTCAACTGAAGAAGCATTTGAGCACTACTCACGCCACTGAGAGGAGTTTTGAGTGTGCCTATTGCTCGAAGACGTTCAAGGGAAAGGGAAATCTTCTTGAGCATATCACGTTTCATCTGGAAAAGCCTCGGCCGTGTCCGATTTGCAACAAGATTCTGAAGAATTCTCGTGCAGTGAAGAAACACATGAGAAATCAACACAGAGGCAGTGAAATTGCACTGCGAAAGCCAGTTTCTTGTCACATCTGTGGCAAGATCTACTCAAGTGATCACTATCATCGACACTTGGCGACTCATGTGAAGATTGAGCGGAGTTTTAAGTGTGAAATCTGCCATCGAGAGTTCGGCAAAAGCTGGTTGCTCAAGGATCACATGAGCACTCACAGTGCAGAGAAGCCATTTGCTTGCGATGTCTGCAGTAAGACATTCAGGACGAAAGTAATCCTCACTCGGCATAAAAAGTGTCACGTTCCTCTCACCGAACCGCCCAAGAAATGTCTCTATTGCTCCAAAACTTACAGGCAACATTCCAGTTTCGATCAACACATGATTATTCACCACAGAGGACTTCCTAAGAGATCAAATAAAATTCCCGTTTGCACAGTTTGCAATACGAAATTCAAGAATCTAAAAGAATTGATCGATCACGTGAAGATTCATAAACTGGAGAAACGCTTCGAGTGTGCAACTTGTGGTGCGAAATTTGTCTACAAATCCAAATTGAAATATCATATTGATATGATTCACTTGAATCGAGAGAATGAGACGAAAGAGGAACAAAAGAAATTCACTGTGGTAAACATAAGGAAAGTGAAAGTCTTGACAAGGAGTGAGATTGTTAATATAATTAAGGAAGAACCACCTGATCCTGAGCCACAAGATAACAATGATCAGGGCGGAAGCTCAACTGTGGAGAAGACAATTAAGACGGAGGATTGCGAAAGAAGAGTTGAGAAGAAAGATTGTCTTCGGGCGCTGCTTAGGCGGATTCGGAGTTACTTGGAGAAACCTCGATCGTGTCCAATTTGTCAGGTGGTCGCGAGGAACTCTCGGAGTCTCGAGGATCACGTGAGGATTCGACACAAGGAATGCAGCGCAGCGGGGAAGGAGAGTCAGCTGGAGTGTGCAGAATGTGGCATGAGATTTGAGGAAAAAGATCTGGTGAAGAGACACATGAAGAGGATTCATTTGAAGTCGAAGGGCCGCAGGGAGAAGATATCGAGCAACAACTACTTGACCAATCTGAAGAAGACTCTGCAGAGACAGAGTTCCAAGACGCCGCTAGTGTGCCAAATTTGCCGGGAGGAATTTGCCTACGTCAATTCCCTCGCGGTTCACATCGAGAGTCACGAGTCGCTGGACGACAGAAGGATCGTCTGTCCCTTCTGCTCGTGCATTGTGGGCCAGAATTTCACTTTGCGCCAGCATGTGGCGAAATATCACCCGAAATTTGTGTCCAGCAAGAATTCCGCCCCGAAGACAATGAATATGAATTTCGTGTTTGAGAGAATGGCATTCTTCTGCAACTTGTGCGGATGGATTTCCACCTGCCAATACTtccacgatcgacacatggcgagacacagtaagccggcgaaggcgcgcaaggtttacgagtgcgaaacgtgccactggaagtatgacagaagagacaagctgaggatacacatgttaacgcacggcacggagaagccctatgtctgcgatgtctgcaacaaggcattcCATTCGAGCTTCCTGCTGAAGCGTCACAAATTGATTCACAATCCTGAGCCCCGAAATTGTCTCTATTGCAAGAAGATCTTCAACACTGGCTATGGATTGCAGATGCACCTGGCGAATGTCCACAGAGGTCTGCCTAGGAAGGGTGGTTCCGATGCTTCGTGCACAATTTGCAAGAAACACTTTCAGAGCATGACAGAATTGATGGCGCACACGAAGATACACAAGTTCCAACAGTGCTTCATATGCGCATTGTGTGGCGTAAAAGTACGCAAGAAATATGCTCTGCAGCGACACATGGAGAATTTCCATATGCATAAGAAGGATTCTGAGGACAAGCACAAGTGCGATGTTTGCCAGAAGACCTTCAACTACAAATACAATCTGCAGAGACATTTGCAAGCGCACAGCAAAACCAAACCGTTTCCCTGCAAAGTGTGCAACAGAAAGTTCAAGTTCATCGATTCGGTGAAGAGTCACATGGAGGAGCATGAAGTGTTGAAGGGAAGTGCCAAGAAGTGCTTCTACTGCACGAAGTGTTACGACGACAAGAGCACAATGCGGAAGCACGTGAGACTGAAGCATCCTGGATTGCCGCTCAACACCGCCGGACCGCCGTTCAGGTGTGCAATTTGCCGCGAAGACTATCTGACGATGAACGATCTGAAGGAGCACGTGAAGGAACACAGGAAATTCCTCACGTGCGGCATTTGCAAGCAGACCTTCAAGGCCAGATACAACCTGAAACTCCACGTTGGCTCTCAACACAGAGACTCCAATTTGCCGAAAGTGATTCTGGAGAAATGCTTCGAGTGTTCAATTTGTGGGAAGAAATTCGACCGAAGGTATCCATTGAAGGTGCACGCAATGAAGTGCGTGGCGAAGAGACGACAATCAGAGAGACTGAAGAAGCGCAAGAAGAGATGA
- Protein Sequence
- MEIKIEKEDPDYSYQPETLFVNCDNVKENYALQDIKEEPVDESFKIASQLKKHLSTTHATERSFECAYCSKTFKGKGNLLEHITFHLEKPRPCPICNKILKNSRAVKKHMRNQHRGSEIALRKPVSCHICGKIYSSDHYHRHLATHVKIERSFKCEICHREFGKSWLLKDHMSTHSAEKPFACDVCSKTFRTKVILTRHKKCHVPLTEPPKKCLYCSKTYRQHSSFDQHMIIHHRGLPKRSNKIPVCTVCNTKFKNLKELIDHVKIHKLEKRFECATCGAKFVYKSKLKYHIDMIHLNRENETKEEQKKFTVVNIRKVKVLTRSEIVNIIKEEPPDPEPQDNNDQGGSSTVEKTIKTEDCERRVEKKDCLRALLRRIRSYLEKPRSCPICQVVARNSRSLEDHVRIRHKECSAAGKESQLECAECGMRFEEKDLVKRHMKRIHLKSKGRREKISSNNYLTNLKKTLQRQSSKTPLVCQICREEFAYVNSLAVHIESHESLDDRRIVCPFCSCIVGQNFTLRQHVAKYHPKFVSSKNSAPKTMNMNFVFERMAFFCNLCGWISTCQYFHDRHMARHSKPAKARKVYECETCHWKYDRRDKLRIHMLTHGTEKPYVCDVCNKAFHSSFLLKRHKLIHNPEPRNCLYCKKIFNTGYGLQMHLANVHRGLPRKGGSDASCTICKKHFQSMTELMAHTKIHKFQQCFICALCGVKVRKKYALQRHMENFHMHKKDSEDKHKCDVCQKTFNYKYNLQRHLQAHSKTKPFPCKVCNRKFKFIDSVKSHMEEHEVLKGSAKKCFYCTKCYDDKSTMRKHVRLKHPGLPLNTAGPPFRCAICREDYLTMNDLKEHVKEHRKFLTCGICKQTFKARYNLKLHVGSQHRDSNLPKVILEKCFECSICGKKFDRRYPLKVHAMKCVAKRRQSERLKKRKKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01191370;
- 90% Identity
- iTF_01191370;
- 80% Identity
- iTF_01191370;