Pcae057122.1
Basic Information
- Insect
- Philophylla caesio
- Gene Symbol
- -
- Assembly
- GCA_963971545.1
- Location
- OZ020606.1:124597313-124617660[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-10 4.2e-07 32.0 0.0 1 38 600 638 600 643 0.89 2 4 8.7e-13 1.3e-09 40.0 0.0 2 39 655 692 654 695 0.94 3 4 1e-16 1.5e-13 52.6 0.0 1 45 709 754 709 754 0.98 4 4 2.9e-18 4.3e-15 57.5 0.0 1 43 761 804 761 806 0.96
Sequence Information
- Coding Sequence
- ATGCTGTGTGCTGTAGTTTATGCTGAAGTCACCTTCTCTTCGGTCGACTCAGCAGTGAGCCGCTTTGCTCGCCCCAACGATGGCTGGTTACTCGGAGTCATTGACGCTTCTGCGGCTATGCGGCTGCTTCAATTGATATTGATTAATTATTTTCGACTCGTACGCAGTGTTTGCGTACAGCTGGTCTCAATCCGGTTCATCAACACATGCACGCCAAAGCAATGCACAATACCTAAGCCAAGCTCTTACACAAGCATACGAGGCTTGCTACGAACTGCAGAACAGTTGAAAATAAAGGGGCTTTGTGAAACGGCAGAAAACACAGACGATTTGAACGACGCGGCTACAGCTACAATAACAGTATCGGAGAATATACAACAAGCAGTTGTTGGTAACATCGTCAACACTGCAGTCGTACAAGGTCAAGCATCTCCCAACACacaacatcagcagcagcaccagcagcagcagcagcagcaacaaatcGCAACGAATGCGGCAGTGCTCACGCACACTATAGGCAACGTGACTACTGCCATTCCACAGCAAATTGGTAATACGGCTGTTAATGCCGCTGGCCAATTGATAACTGCTGGCACATCGGTCCAACAGCCACAAATTGGACGTAAATCTCGTGTCCGTAAGCGCTCTAAATCGCCAGATCTACAGCAACAAGTACACAATACTCAACAACAAGTCCAACAGCATccgcaaacaattttaattcagAATCAAAATCAAGCTTCTATCGTTAGTTTGCAACAGACCTCCTCTGGCAATTATATACCTGTATCTGGTGTGCACACCGTCACTACAAGCGTAGCTGGGCAGCAGCAGGCGGTAATCACCGGTGACGACTCGGATACGGACAAGCCGGTGCTGTCGAAAATCTGTAAGACAGAAACAGCGTCAGCGTCACCTGCATCCAGCGGCTCTGGTGTATCGGTCTCGAATAATGCTGGAGGCGTAACGACTGTTGCAGCACCAGGTACAGCGATTGTTACGCAGATTGTTGTGGCTCGAGACAGCAAAGATAAAAATATGACTAGTTTAGGAATGGGAATGaatGGCGGCATTCTTGGTGTGCCAATGGGCTTTTTAGATTTTGCACCAGAACCACCAGCACCTTCGGCAACACCTGTTACCGTAACGGAGCATGTCGATTTATCTTGCAACCCCAACACCGACACCCGAGATTTATCAAATCCCACCGAAGCACTTGACATTGACAATCACTTGGCCCAACATATGATTCAACGGCTTGATCAATCTCCGATGCATACTATTCACCATCAAACTGGTGATGAGAGCAATTCAAATTTAGTTCAGCACATTAAGAGTGAGGTGATTGAGGCGAAGCACCAGCAAgtacagcaacaacagcatcatcaacaacagcaacatcaatTACATGCACAACAACTTTCACAAACACAagcacagcaacagcaacatcagcaacaacagcaacaacaacatcaagtACATCAACAACAAACATCTCATTCACACTCATCACATAGCCAAACGCAAGCACAATCACATCAGGACTTATCCGGCGCAACAGTAATGGAAATTGATCCGAGCCAAATAAAACATGAACCTGGAATGATCATAACACCGGAAATAGTAAATATGATGACTACTGGACATATGGATATGTATAACTCAGATACGAGTGAGGATTCAATGATGATAGCAAATGGCTCACCTAACGATCAAAATGAGCCACATTATACAAATTTGGACCAACAAAATGTGGATATTAAAGGTCAGTTCAATGGTCCCAAAACTTGGACTCAAGATGATATGAATTCAGCTTTAGATGCGTTGAAGAATCAAAATATGAGCCTTACAAAGGCTTCAGTTACATATGGCATACCATCAACCACTTTGTGGCAACGCGCCCATCGTATGGGCATTGAAACGCCAAAGAAGGAAGGTGGTACGAAATCATGGAATGAAGATTCTTTAAATAACGCTTTAGAAGCCCTGCGCTCTGGGCAAATATCTGCAAATAAAGCGTCTAAAGCCTTTGGTATACCCTCGTCGACACTATATAAAATTGCGCGTCGTGAGGGTATACGTTTAGCGGCACCATTTAACGCCGCTCCCACAACGTGGACTCCAGAAGATTTGGAGCGAGCATTAGAAGCAATACGAGCCGGTCATACGTCCGTTCAAAAAGCCAGTGCCGAATTTGGGATACCTACAGgaaCACTTTACGGTCGCTGCAAACGTGAAGGTATTGAATTATCTCGTTCGAATCCAACACCTTGGTCAGAGGACGCAATGAATGAAGCTCTTAATTCAGTCCGTATTGGTCAGATGTCTATTAACCAGGCAGCGATTCACTACAACCTCCCCTATAGCTCATTGTATGGCCGCTTTAAGCGAGGAAAATATGACGTGACTAATACCAGCAGCACCTCCATTAATAATACATCAGGAAATACTTCGGGAAGCATCGAAATAATTGAGCATAGTCAAGAAAACTCGTTGCATATATTTCAGCAACAGTTCCAGTATAGTCCGTCACCACATCAACAACCTCAGCATGGCGGTCAATCTCAATCGCAGACGCCTCAACATTTAACTCAACATGTTGTACACATTCAACAATCACAGACTCATCATCAGCAACAAGTGCACGcccaacagcaacaacatatCCAACAGCAGCAAGATGTTGTAACATCCAGCAGCCAAGTGGGACATAGCAGTGCAGCGGCCggacagcagcagcaacaaattCAACAGATCTATCATCATCACAGCACGCCGGAAAGAAGTTGA
- Protein Sequence
- MLCAVVYAEVTFSSVDSAVSRFARPNDGWLLGVIDASAAMRLLQLILINYFRLVRSVCVQLVSIRFINTCTPKQCTIPKPSSYTSIRGLLRTAEQLKIKGLCETAENTDDLNDAATATITVSENIQQAVVGNIVNTAVVQGQASPNTQHQQQHQQQQQQQQIATNAAVLTHTIGNVTTAIPQQIGNTAVNAAGQLITAGTSVQQPQIGRKSRVRKRSKSPDLQQQVHNTQQQVQQHPQTILIQNQNQASIVSLQQTSSGNYIPVSGVHTVTTSVAGQQQAVITGDDSDTDKPVLSKICKTETASASPASSGSGVSVSNNAGGVTTVAAPGTAIVTQIVVARDSKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPNTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIEAKHQQVQQQQHHQQQQHQLHAQQLSQTQAQQQQHQQQQQQQHQVHQQQTSHSHSSHSQTQAQSHQDLSGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQNEPHYTNLDQQNVDIKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSSTSINNTSGNTSGSIEIIEHSQENSLHIFQQQFQYSPSPHQQPQHGGQSQSQTPQHLTQHVVHIQQSQTHHQQQVHAQQQQHIQQQQDVVTSSSQVGHSSAAAGQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00192007;
- 80% Identity
- -