Pcog009729.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- bab1
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000047.1:219583-227429[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-13 1.3e-10 43.1 0.1 3 45 370 412 368 412 0.92
Sequence Information
- Coding Sequence
- ATGggtagtaacgcccagcaatactgcctacgatggaacaaccaccgatcgaacctcctcaccgtcttcgacgagctcctccaaaacgaggccttcacggacgtgaccctggtgtgtgagggcggcagccccatcaagtgccataggatggtcctggccgcgtgctcgccatatttccaaaacctcttcaccgacctcccctgcaaacaccccgtggtcgtcctcaaagacgtcaaatacatcgagatcaaagccatactggagtacatgtaccgaggcgaggtcaacgttgctcaagaccagctagcagctctactcaaagtagccgaagcgcttaaagtaaaaggtctggtggaggagaacaggacgggacagcggAAAACCCCGAACGAATCAGAAACCTCCCCTCCAGAGCAAGGAGTCAGTCCATCCAGTACAAACAACAATAACAACAACAACACGCAATCAACGGTGCACAGCAGCAGCAATAACTCACCCCCTCATTCCACGAACGGTATGCTCTACAAAAATCCTTACAGTATGTACGGAAAGGCGCCTTCGATAGATCGGGGATCGAGGATGAACATCCCGATGTGGACCATGCCTGGTATTCCGTTGCCCCAGCATCCCTCACAAGTGCCTCAGCAGAATCACCCTCACGCTCCCGCGACGGTTGCGGCGGCGATGCTCAATAGTTGTTACGAAGCTGGAAACTCCGATTTGAACCCCTTGAAAAGGAAGAAGTTATCCGGCTTGCTGATGAACAGAGATACGCCGATTTTGAGGACGGTTTTGGGCCAAGCCGATTCATCACAGCCCGTCAGTTTAGTTTGCCATTCCGATAACAACTACCAGAGTGAGAATGTTAACTCCAATGGAGTTGATGAACGAATTCCTGAAAAGCATATAAAAAATGAGCCTTCCGAAGACGCCCAATCCCCCTACACGGACCTCTCCATGATCGACGACGAAGAGAAGACCAAACTCGGAGTGCCTTCATCCTCGCCCCACGCGTATTCCGGAGAAATGCGCGGACTATCAGGAATCGCCACGTACGTCCCAAACACCCAAAAACCCGAATGGAAACGCTACAAACAGTACACCAGAAACGACATCATGTCCGCCATCGAATCCGTCCGCAATGGAATGTCGGCCTTACAAGCGGCGAAAAAATACGGAGTGCCTTCGAGAACCCTCTATGATAAAGTTAAAAAGTTGGGGATCACCACGAGCAGACCTTTCAAGAAAGGTACAAACGGAAGCAGCGCCTGTTTCCCGTATGGGATCTCCGGAACCAGCTCACCTTACGGACATTTGGAAGGGGATGAGCATGGGATGAATAATAATAGCGCTTTAATGGAGGCTAATAGCATCCTGCAGCATGCGCTGGATAGCCGTGGTGGGGATGAGCGGGAGGCGTTAGCGGCGATGGCCGCTGCAGCAGCTGCGCACGCAGCGATTTCCGGACACAGCACCAGCCCCAACAACAACAGCCACGCGAGGAGCCCCAGCCCGAGCCCTAATCTCCTGAAATACATGAGGTTGAATAGCATGACCCCTTCGCCGGCACCGGGGAGCGAGCACAACCACAGCGAAACCAACGGCAGCTCGGAGCGCGACAGGGAGGAAGAGGACGACCAAGTCGAAGACCTATCAGTCAGCAGAAAGCAGGAATCTCGTGTGATAATGCCCCCCATGAGCATGTCTTCGCTCATCAAAAAAGAGGAAATGCTCAAAGAAACGCTGCGGGAAGAAATGCGTCGCGAGGTAAGCGTCGAACACGCTGAGTAA
- Protein Sequence
- MGSNAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLVCEGGSPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYIEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRTGQRKTPNESETSPPEQGVSPSSTNNNNNNNTQSTVHSSSNNSPPHSTNGMLYKNPYSMYGKAPSIDRGSRMNIPMWTMPGIPLPQHPSQVPQQNHPHAPATVAAAMLNSCYEAGNSDLNPLKRKKLSGLLMNRDTPILRTVLGQADSSQPVSLVCHSDNNYQSENVNSNGVDERIPEKHIKNEPSEDAQSPYTDLSMIDDEEKTKLGVPSSSPHAYSGEMRGLSGIATYVPNTQKPEWKRYKQYTRNDIMSAIESVRNGMSALQAAKKYGVPSRTLYDKVKKLGITTSRPFKKGTNGSSACFPYGISGTSSPYGHLEGDEHGMNNNSALMEANSILQHALDSRGGDEREALAAMAAAAAAHAAISGHSTSPNNNSHARSPSPSPNLLKYMRLNSMTPSPAPGSEHNHSETNGSSERDREEEDDQVEDLSVSRKQESRVIMPPMSMSSLIKKEEMLKETLREEMRREVSVEHAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01400283;
- 90% Identity
- iTF_01096751; iTF_01185246; iTF_01096543; iTF_01186108; iTF_01186326;
- 80% Identity
- iTF_01185246;