Palb020596.1
Basic Information
- Insect
- Philonicus albiceps
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963969385.1
- Location
- OZ017774.1:33305406-33309789[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-112 2.6e-107 359.4 33.1 1 299 113 397 113 398 0.91 2 2 0.0028 92 3.0 4.0 208 247 415 453 400 471 0.75
Sequence Information
- Coding Sequence
- ATGGCAcaagaaaacgaaaatgttaTAGTTCAAAATCTGGAAACAGATTTTACTGAAAGTGTTGCCGCATCCTTGAATAAAAGCGATGACGATGAAGAATTTGACTTCAGTGATAGCGATTTTAAAGATTGTGAGAGTGATAACGCTGTAGAAGATAAAATtgaatctgaaaattttatagaaataaatgaagCAAGTGATGGTGATGAGCcttgtattaaatataatagaattatATCAAGAAATCAAAGTGTAGACAATGATGACAGTGATTGGCTGCATAAGGAAAATGAAGATGAATTCATTGTTAATTTTCTTGGGAAAGGAAATGACATTgcGGAGGCTAGATTGGCTGCACGACGCCAAGCACGCGCAGAAGCGCGTGAAATTCGAATGCGTGAATTAGAGCGCCAACAAAAAGAGCAAGAACAAAATGCTGATCGTGTATTTGATATGCAGACTGTGGCCGGGCTCGATCCCTTGTCTAGATCCCGGCTAAACATGTCAGGAAACTCTGGAAGAGGTACTTCAATGTCCTCAAGACGGAGCAGCGAGGATTCCCTCGAAGAAGAAAGTAGAAGCTTACGTGATATTAGGCATGAGCTTAAGgaTGTTGAAGAACGATTTAGAAAAGCAATGATAGCAAATGCACAATTAGACAATGAAAGAGCCTCACAGTCATACCAAATCCAATTGCTAAAAGATAAATTGGAGGAAATGGAAGAATCATTTGCGCAACTCCAGAGAGAATATAAGGAGAAATGTCGTGATCATAAcgctttaaaaagaaattatgataaattagATGAAGAATTAAAACTAGTTCGTGGGCAATTAGATGAAAGAGATACTCTTATAGCTGAGCAGGGTTTAGTTATAGTTCTGGTAGAAAATCAAGATGGCTCAGATGCCAGGCGCGCTCTAGTCAGTATGGAGAACGCACAACTATTAGGTTCTGTTCAAGGCTCATTAgATGTGCGGCTTAAAAAATTCACTGAAGAAAAGCAACAACTCCAAAAAGAAGTCCAAAGCCTTCATCAGCAACTAAGTGACATTAAATCTCAAGGTCGACGGGGTGGATCTCTAAACGGGCCTTTAGGAGCAGAAGATGACTATGAAGCTCAAAgaGAGGCTAATAAACTTATAGCTGATTATAAATATAAGCTTCAAAAGGCCGAACAAGAAATAGCTAGCTTACAAGCTAGTTTAGCAAGGTCTGAGACACAAGTTATAAGATATAAAAGTACCGCAGAAGCAGCTGAAAAAGCAGAAGGTGAACTAAAAATAGAGCGAAGAAAACTTCAAAGagaaaatCGTGAATTAATGGAACGTTTGGAAGAGCTCGAGACTTCCAATAATCACCTACTGAAACGCTTAGATAAACTAAAGAATGCGAAGAGCGCACTGCTCAAAGACCTCTGA
- Protein Sequence
- MAQENENVIVQNLETDFTESVAASLNKSDDDEEFDFSDSDFKDCESDNAVEDKIESENFIEINEASDGDEPCIKYNRIISRNQSVDNDDSDWLHKENEDEFIVNFLGKGNDIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTVAGLDPLSRSRLNMSGNSGRGTSMSSRRSSEDSLEEESRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREYKEKCRDHNALKRNYDKLDEELKLVRGQLDERDTLIAEQGLVIVLVENQDGSDARRALVSMENAQLLGSVQGSLDVRLKKFTEEKQQLQKEVQSLHQQLSDIKSQGRRGGSLNGPLGAEDDYEAQREANKLIADYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEGELKIERRKLQRENRELMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628366;
- 90% Identity
- iTF_00628366;
- 80% Identity
- -