Ptra021479.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004347.1:22039774-22044027[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 5.4 5.3e+02 2.5 0.1 2 23 22 44 21 44 0.92 2 30 0.0015 0.15 13.7 2.3 2 23 67 88 66 88 0.96 3 30 0.016 1.6 10.4 1.5 1 23 92 114 92 114 0.96 4 30 0.044 4.4 9.0 2.0 1 23 118 141 118 141 0.95 5 30 0.05 4.9 8.9 3.7 1 23 147 170 147 170 0.96 6 30 0.1 10 7.9 1.7 1 11 177 187 177 191 0.88 7 30 8.9 8.8e+02 1.8 5.6 1 19 239 257 239 262 0.87 8 30 2.3 2.3e+02 3.6 0.3 1 23 287 310 287 310 0.92 9 30 7.2e-05 0.0071 17.8 0.7 1 23 331 353 331 353 0.98 10 30 0.0043 0.42 12.2 0.2 1 23 357 379 357 379 0.95 11 30 3.2 3.1e+02 3.2 2.4 3 23 385 406 383 406 0.80 12 30 0.011 1.1 10.9 5.1 2 23 411 433 410 433 0.95 13 30 0.15 15 7.4 2.0 1 23 439 462 439 462 0.89 14 30 3.7e-05 0.0036 18.7 1.2 1 23 468 491 468 491 0.97 15 30 0.059 5.8 8.6 3.6 1 23 538 560 538 560 0.96 16 30 0.3 30 6.4 0.0 2 23 589 611 588 611 0.93 17 30 0.032 3.2 9.5 0.4 2 23 632 654 631 654 0.94 18 30 0.002 0.2 13.3 2.8 3 23 661 682 660 682 0.97 19 30 0.0056 0.55 11.9 1.1 1 23 687 710 687 710 0.95 20 30 2.2 2.1e+02 3.7 0.2 2 23 713 735 712 735 0.93 21 30 0.0015 0.15 13.7 1.6 2 22 742 762 741 762 0.94 22 30 0.0093 0.91 11.2 0.4 1 23 820 843 820 843 0.92 23 30 1.9 1.9e+02 3.9 0.0 3 23 872 893 870 893 0.93 24 30 0.19 19 7.0 0.2 3 23 917 939 915 939 0.95 25 30 0.0008 0.079 14.5 0.4 3 20 946 963 944 967 0.90 26 30 0.049 4.8 8.9 0.5 1 23 972 995 972 995 0.97 27 30 0.0006 0.059 14.9 0.2 2 23 1001 1023 1001 1023 0.94 28 30 0.00013 0.013 17.0 4.8 1 23 1027 1050 1027 1050 0.97 29 30 0.00074 0.073 14.6 0.6 2 23 1057 1078 1056 1078 0.96 30 30 0.0079 0.78 11.4 2.3 1 23 1084 1106 1084 1106 0.97
Sequence Information
- Coding Sequence
- ATGAAATCGATCGGCGTCCTTATAAAGAAAGACGATAAAGTTAAAATTGATGTTGCCTCTATCAGCTGTAAACTTTGCGACTCTAAACCTAAAGACTTAGACGCTCTTATAGACCATTTGAAGAATGcacataataaaatgttttatgacGAATTAGGGTACGGAGTAATGCCGTACAAGCATAGTGCTGGAACCTGCCAATGCGCAATATGTGATGAGACCTTCCAATACTATATCAAGTTGAACCAACACATGAATAAACATTACGGACAGCACGTATGCGAAGTGTGCGGCAAATCGTTCCTAAGTACCAGACGTCTGAAGATCCACACGCTTTCTCACGGTTCAGGGTTCCCCTGCAACCACTGTTCTGAGGTTTTCGACTCCTACGCTAAGAGAAAGAACCATTATGCTAGAATGCATGATATATCGAAGTTCCATAAGTGTAGCTACTGTTCTGAAACGTTCCCGAACTACGGGGCTAGGACACTACACCACCGCTACGCTCATAACATTGACACGCCGATTTTCAACTGCCCCGTTTGCGGAAAGACTTTTCGCCTTTGCAGTGGCAATCGCCCAGTACCCGCAGACACAGAGACACAGAGTAACTCCTCACTATCGAGCACAAAGCGCAATCGCTTGGGGAAGCGGAATACGACACTTATTTTAGAAAGTTGCACGGCCGTCCCTTTCAAATGGCATAGGCAGTTCTACCTATGTTTCTATTGCCACAAACAATTCAAACTCTTTAACGGCCTTAAAGAACATTGTAATCTTGAACATGAAACATCGAACGTAAAATCGTCCATCTTGCTTCTACGAATGAACGATAAGGTCAAAATCGATATCACATCATTTCGCTGCAAACTTTGCAATTTCGAACCGAACAACGTAGACGATCTTGTAAACCATTTAAAGTTCGTTCACAATAAGGTGTTTGAAGATGCCCAGTTAGGGGTAATACCCTACAGACTTGGAACAGATTCGTACGCTTGCGCGATCTGTGACGAACGCTTCTCATACTTTATGAAGTTGAACCAGCATATGAATACGCATTTTGGGCAGTATGTGTGTGAGACGTGTGGTAAATCCTTCCTAAGTCGCGCTAGACTTAGGATCCATGCGTTAAATCACATCAGTTTCGTCCACTGCGATCACTGCTCAGAGACTTTCCGCTCCATCTCCATAAAGAATACCCACGTAAACAAAGTCCACGACTCGAAAGTTAAATGTCATCATTGCAACGAAACCTTTTCGAACTACAATCAAAGGAAAATGCACCTTAAGTTAGTTCATAACGAAGGTTCGTTGCACACTTGTCCCGTCTGCGGGAAGGAATACTCCTGTAATAGTAGAATGGAGACTCACGCGAAAGAAGTACATTATAAAGATACTAGGTTTGATTGCTCAATGTGTGAGAAACGGTTCTTTTCGAATTGGCAATTGGCAAAGCACATTAGGAGGATGCACGGTGGGGGAAAAGAGCCTGTACGAGATGTTAAACCGCGCAAAATCAAGGGAGGCGAATCCTCGTCAATGCGCAGAAGAAAAAACCTTCAAATATTGTTCAACAATACGTCTATTATACCTTTCAAATGGAGAGGAAAGTATCTCTGCTTCTATTGTAGTAAACATCTGTCGGAATACGCAGAGTTACGGAAACATACAAAATCCCACGGCAACTGTTCTATTTTAGATCATTCTTTGAAAGTTTTAAAAGGGGGCACAAATATGGAAatcaaaattgacgtttcagatGTCACTTGTGAAATTTGTGGGGAAATGCTCGCCTCCTTTGAAGAAGTAATCGATCATTTGAAAGCTAAACACAAAATAGAATACGACAAGGAAGTTGATATGGCTATAGAGGCGTATAAACTGGCAGATCTTAGTTGTCTAACGTGCGATGAAAAGTTTACCTACTTTGGTTACTTGGTGTCCCATGTGAACAATCAACATCCAAAGAATTGTATCCTGTGTGATAAATGCAATCAAAACTTCAATAAAAAGAGGGACCTGTTCTCTCATATGAAGAACTATCATAGAGAAGGAGGCTACCAATGTGATTTGTGCCCACAAACATTTAGCTCGTTGAATATATTGCGGAAACACAGAAGCAATCGTCATCTAACAAGATGCAACCTCTGCCAGTTGAGACTCCCCTCTGCAGCCTTGAAACAGAAACATATAGAACTAGAGCACCCCGACGACGGGTCCTTGCAATGCGACAATTGCGATAAAGAGTTCCACACGAAGACTGGGCTCAGAATGCACACAAGGAAATGCAAGGTAGATTTGTTCGAATTCGCCGTCAAAAAAGAAGATTACACGATGGATTTGGATCAAAATTACGAAGATCTGGCTAAAAGGCCAAGCGTGAAGCAAATTCGCGAAAACATAGTGATCGTTATAAACATGTCCACGGCTATACCGTTCAACTTCTACAAGAATAAGTTCAACTGCTTCTATTGCTCCAAAGATTTCCCTGACTCCGACTTAATGAGAGAACACACAGTGGTAGAACATCCAGTCTGTGATATCAAAGAGAAATGTATAAGAAAGTGTAGAGAAACAGTCACTTGCGTTAAAATAGACGTATCGACGTTAGCTTGCAAGATCTGTTTCGAGTCCATGATCGATTTGGACAAACTTCTCGATCATTTGATCGTCAATCACAAGGCTAATTACGACAAGACCATTACGACTTGTTTGCAACCGTATAGGTTGATAAAAGATCACATGGCGTGCCCGAATTGCCCGAGTGAAGAGTTCCGATTCTTTGGCACTCTGCTCAAACATATGAATAAAgaacatactaataataacattatttgTGTTTACTGCGGAGAGACGTTTCGACGGGATCAAAACCTAAGAGTCCACATCTGGCGGCATCATAGAGATGGCAGATTCAAATGTAATATTTGCGATGCGGATTGCAATATACCTTCACGTTTATACATGCATATGGCAAAAGCACATGGAGTAAGAGCAGCAAAATGTCCAAAGTGCCCAGAATCATTTGCCACTCAGTATCTTCGACAGAAGCATCTGATCGAAGCGCACAACTCAGGTCACAAGTGCACATACTGCGGTAAACAATTTACTAGAGACTCGTTTATGCGAGATCATATACGCCGTACTCATTTAAAAGAGAAAAACGTTGAGTGTTCTATTTGTAGCATGAAATTCTTCAACAATATTCTTCTGAGGCGACATATGGTAAAACATAGCGGAGAGAAGAACTTCCATTGTGATGTGTGTGGGGAAAGATTTTTCTGGCGAAAAAGTTTAAGAACTCATATGGCGAGGCACAATAAGCACCTTCAACCATTACATATATAg
- Protein Sequence
- MKSIGVLIKKDDKVKIDVASISCKLCDSKPKDLDALIDHLKNAHNKMFYDELGYGVMPYKHSAGTCQCAICDETFQYYIKLNQHMNKHYGQHVCEVCGKSFLSTRRLKIHTLSHGSGFPCNHCSEVFDSYAKRKNHYARMHDISKFHKCSYCSETFPNYGARTLHHRYAHNIDTPIFNCPVCGKTFRLCSGNRPVPADTETQSNSSLSSTKRNRLGKRNTTLILESCTAVPFKWHRQFYLCFYCHKQFKLFNGLKEHCNLEHETSNVKSSILLLRMNDKVKIDITSFRCKLCNFEPNNVDDLVNHLKFVHNKVFEDAQLGVIPYRLGTDSYACAICDERFSYFMKLNQHMNTHFGQYVCETCGKSFLSRARLRIHALNHISFVHCDHCSETFRSISIKNTHVNKVHDSKVKCHHCNETFSNYNQRKMHLKLVHNEGSLHTCPVCGKEYSCNSRMETHAKEVHYKDTRFDCSMCEKRFFSNWQLAKHIRRMHGGGKEPVRDVKPRKIKGGESSSMRRRKNLQILFNNTSIIPFKWRGKYLCFYCSKHLSEYAELRKHTKSHGNCSILDHSLKVLKGGTNMEIKIDVSDVTCEICGEMLASFEEVIDHLKAKHKIEYDKEVDMAIEAYKLADLSCLTCDEKFTYFGYLVSHVNNQHPKNCILCDKCNQNFNKKRDLFSHMKNYHREGGYQCDLCPQTFSSLNILRKHRSNRHLTRCNLCQLRLPSAALKQKHIELEHPDDGSLQCDNCDKEFHTKTGLRMHTRKCKVDLFEFAVKKEDYTMDLDQNYEDLAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTVVEHPVCDIKEKCIRKCRETVTCVKIDVSTLACKICFESMIDLDKLLDHLIVNHKANYDKTITTCLQPYRLIKDHMACPNCPSEEFRFFGTLLKHMNKEHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICDADCNIPSRLYMHMAKAHGVRAAKCPKCPESFATQYLRQKHLIEAHNSGHKCTYCGKQFTRDSFMRDHIRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKHLQPLHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01100006; iTF_00119799;
- 90% Identity
- -
- 80% Identity
- -