Basic Information

Gene Symbol
-
Assembly
GCA_001266575.1
Location
JTDY01005941.1:13456-18146[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 8.3 5.3e+02 1.3 0.1 2 23 114 136 113 136 0.89
2 31 0.00047 0.03 14.7 2.0 2 23 159 180 158 180 0.96
3 31 0.0068 0.43 11.1 1.6 1 23 184 206 184 206 0.96
4 31 0.12 7.6 7.1 1.6 1 23 210 233 210 233 0.95
5 31 0.61 39 4.9 6.3 1 23 239 262 239 262 0.96
6 31 0.051 3.2 8.3 1.5 1 11 269 279 269 283 0.88
7 31 0.66 42 4.8 1.8 1 23 332 354 332 354 0.89
8 31 8.9 5.6e+02 1.3 0.1 2 23 380 402 379 402 0.87
9 31 0.0002 0.012 15.9 1.1 1 23 423 445 423 445 0.98
10 31 0.94 60 4.3 0.1 1 22 449 470 449 471 0.73
11 31 0.38 24 5.6 0.4 2 13 476 487 475 498 0.77
12 31 0.12 7.4 7.2 1.7 2 23 503 525 502 525 0.95
13 31 0.38 24 5.6 2.1 1 23 531 554 531 554 0.91
14 31 0.00052 0.033 14.6 0.3 1 23 560 583 560 583 0.96
15 31 4.1e-07 2.6e-05 24.3 2.2 1 23 589 611 589 611 0.98
16 31 0.015 0.94 10.0 1.7 1 23 662 684 662 684 0.96
17 31 1.4 90 3.8 0.0 2 23 713 735 712 735 0.94
18 31 0.16 10 6.7 0.2 2 23 756 778 755 778 0.92
19 31 0.0012 0.075 13.4 3.2 3 23 785 806 784 806 0.97
20 31 0.0042 0.27 11.7 1.1 1 23 811 834 811 834 0.95
21 31 0.55 35 5.0 0.1 2 23 837 859 836 859 0.93
22 31 0.008 0.51 10.8 0.8 2 21 866 885 865 886 0.93
23 31 0.0039 0.25 11.8 0.6 1 23 944 967 944 967 0.93
24 31 0.082 5.2 7.6 0.1 3 23 996 1017 994 1017 0.94
25 31 0.052 3.3 8.3 0.3 3 23 1041 1063 1039 1063 0.95
26 31 0.0006 0.038 14.4 0.4 3 20 1070 1087 1068 1091 0.90
27 31 0.023 1.4 9.4 0.4 1 23 1096 1119 1096 1119 0.97
28 31 0.0005 0.032 14.6 0.2 2 23 1125 1147 1125 1147 0.94
29 31 4.7e-05 0.003 17.9 4.9 1 23 1151 1174 1151 1174 0.97
30 31 0.00088 0.056 13.8 1.0 2 23 1181 1202 1181 1202 0.96
31 31 0.012 0.76 10.3 3.3 1 23 1208 1230 1208 1230 0.97

Sequence Information

Coding Sequence
ATGGATTTGAACGTGCGTTTTTCCTTTTTAGGTGGCAATCGCTCCGAGCCTGTGCCGGCCGGCGCCGCCGCCGGCGAGGCATCGAAACTGTCCCCAATCACATGTATTAAGCGCAACCGCCTTATAAAGATGAACACCATTACTATTCTACAATGCTCAACCGTTATCCCCTTTAAATGGCACCGGCAGTGCTACCTCTGTTTCTATTGCAACTCCCAACTTAACACGTTCGAAGTTCTGAAAATACACGTCGAAAACGAACACAAAACCACTAACATGAGATCGATCGGGATACTGATAAAGAAGGACGATAAAGTCAAAATTGATGTAGCCTCCATCAGTTGTAAACTTTGCGACTCCCAACCTAAAGATTTAGACGCTCTTATAGATCACTTGAAGAACGTACACAATAAACTGTTCTACGATGAATTGGGGTACGGAGTCATGCCGTACAAGCACAGTGCGGGCACCTGTCAGTGCGCCATATGCGATGAGACCTTCCAATACTACATCAAGCTAAACCAACACATGAACACTCACTACGGACACCACGTGTGCgaaatttgcggcaaatctttCCTTAGCACCAGACGACTGAAAATCCACACGCTCTCTCACGGCTCTGGGTTTCCCTGCAACCGCTGCTCCGAAACCTTCGACTCTTACGCTAAGAGGAAGAATCACTACGCCAGGACGCATGACATACCGAAGGTGCACAAGTGTTGCTACTGCTCAGAAACGTTCGCAAACTACGGCGCAAGAACACTCCACCACCGCTACGCTCATAACATTGATACGCCGATATACAACTGCCCCGTCTGCGGAAAGACTTTTCGCCTTTGCAGTGGCAATCGCCCCGTGCCCGCGATGTCCCTGAAGGCACTGAGTAAGTCCTCATTATCGGCCACAAAGCGCAATCGTCTTGGGAAGCGTAATGCCACTATTATACTACAGAGTTGCACGGCCGTCCCGTTCAAATGGCACAGGCAGTTATACCTGTGCTTCTATTGCCACAAACAATTCCAAGCCTTTGGCGATCTTAGAGAGCACAACATCGAACACGAAACATCAAACATAAAATCATCCGTATCGCTTCTGCGGATGAATGATAAAGTCAAAATCGATGTCGCGACATTAAGCTGCAAGCTTTGCGACTATGAACCGAAAAACGTGGACACGCTGGTTGAGCATTTAACGCTCGTCCACAATAAGATGTTCGAAGACGCCGAGTATGGGGTCATACCGTACAAACATCGAACTGATTCGTACGATTGCGCGGTTTGCAACGAACGCTTCTCATATTTTATGAAGTTGAACCAGCACATGAACACGCATTTCGGTCAGTATGTGTGTGAGACGTGCGGTAAGTTGTTCCTAAGTAGCGCCAGACGCAGAATCCACGCGCTCATTCACACAATTGACGTGCGCTGTGACCACTGCCCGGAAACATTCCGCTCCATAGCAATCAAGAACTCCCACGTAAACAAAGTACACGAATCAAAAGTCAAATGTCCGCATTGCATCGAAACGTTTTCAAACTATAATCAAAGAAAAATGCATCTGAAGTTAATTCACAACCTGGGTTCGTTGCACGCCTGCCCTGTTTGCGAGAAGGAGTTCTCGTGTAATAGCAGGATGGAGTATCATCTGAAGGAGGTGCATTATAAAGAGACTCACTTCGACTGCTCCTTGTGTGAACAACGGTTCTTCTCGAATTGGCAGTTGGCGAAACACGTCAGGGTTATTCACGTTCGCGGGACAGAACACCAGTGTGGAGTTTGTGACAAATCTTTCGCTAGACAGAGAACTTTGAATGAACATATGAAAACGCATAGCGATGATACAAAtacaaaactaaatttattttcagatgtTAAACCGCGCAAATACAAGGGCTGCGAATCCTCTTCGATGCGCCGAAGAAAAAACCTCCAAATATTGTTCAACAATACCTCTATTATACCTTTCAAATGGAGAGGAAAGTATCTCTGTTTCTATTGCAGTAAAAACCTATCAGAATACGCGGAGTTACGGAAACATACAAAATCTCATGGCAACTGTTCTACGCTTGACCATTCTTTGAAAGTCTTGAAAGGTGGCACCAATATGGAAATCAAAATCGATATTTCAGATGTTACTTGTGAAATTTGCGGAGGGATTCTCCCATCCTTCGATGACGTTATAGATCATTTGAAAGTCAAACATAAAATAGAATACGATAAGGATGTAGACATGGCTATCGAAGAGTACAAACTGGCAGACCTTAGTTGTCTAGCGTGCGATGAAAAGTTCACCTACTTTGGGTACTTGGTATCGCATGTGAACAATCAACATCCAAAGAATTGTATCCTGTGCGATAAATGCAATCAGAAGTTCAACAAAAAGAGAGACCTGTTCTCACACATGAAGAATTATCACAGAGAAGGGGGCTACCAATGCGATCTGTGTCCACAAACATTCAGTTCGTTGAACATATTGCGGAAACATAGAAGCAATCGACATCTCACTAGATGTAACATCTGCCAGCTAAGGCTTCCTTCAGCAGCGTTGAAGCAGAAACATATAGAGCTCGAACACCCCGACGACGGTTCCTTGCAATGCGACAATTGTGATAAAGAATTTCATACAACGACTGGACTGAGAATGCACGCGAGGAAATGCAAGGTTGAATTGTTCGAATATGCCGTCAAAAAAGAAGACTACACGATGGATTTGGATCAGAACTACGTGGATCCGGCTAAAAGACCGAGCGTGAAGCAAATCCGGGAAAATATAGTGATCGTTATCAACATGTCCACAGCCATACCGTTTAATTTCTACAAGAATAAGTTTAACTGCTTTTATTGCTCCAAAGACTTTCCAGATTCCGATTCTATGCGAGACCACACAGTAATGGAGCATCCAGTGTGCGACGTCAAAGAGAAATGCATAAAAAAGTGCAGAGAAACAGTCACCTGCGTGAAAATAGACGTAGCGACACTAGCGTGCAAGATCTGCTTTGAATCTATGACCGATTTGGACAATCTTCTCGATCATTTAATCATAAAGCACAAAGCTAACTATGATAAGTCCATCACCACTTGCTTACAGCCATATAGGTTGGTCAAAGATCACATGGCGTGCCCGAACTGTCCTAATCAAGTGTTCCGATTCTTCGGCACGCTGCTCAAACATATGAATAAAGAGCATACGAATAACAACATTATTTGTGTGTACTGCGGCGAGACTTTCCGTCGCGACCAAAACCTAAGAGTCCACATTTGGCGGCATCACAGAGATGGCAGATTCAAATGCAATATTTGCGATGCAGAATGCAATATACCTTCTCGACTTTACATGCATATGGCGAAAGCACACGGGGTGAGAGCGGCGAAATGTCCTAAGTGCCCCGAAACTTTTGCCACCCAGTATCTTCGACAAAAGCATTTGATCGAAGCGCACAATTCTGGTCACAAGTGCACTTACTGTGGGAAGCTGTTCACTAGGAACTCGTTCATGCGTGATCATATCCGACGCACACATTTGAAGGAGAAAAACGCTGAGTGTTCAATCTGTAGCATGAAGTTCTTCAATAATATTCTCCTGAGAAGGCACATGGTGAAACATAGCGGGGAGAAGAACTTCCATTGCGATGTGTGTGGGGAGAGATTCTTCTGGCGAAAAAGTCTGAGGACTCATATGACGAGGCACAATAAACACTTCCAACCTTTGCACATGTAG
Protein Sequence
MDLNVRFSFLGGNRSEPVPAGAAAGEASKLSPITCIKRNRLIKMNTITILQCSTVIPFKWHRQCYLCFYCNSQLNTFEVLKIHVENEHKTTNMRSIGILIKKDDKVKIDVASISCKLCDSQPKDLDALIDHLKNVHNKLFYDELGYGVMPYKHSAGTCQCAICDETFQYYIKLNQHMNTHYGHHVCEICGKSFLSTRRLKIHTLSHGSGFPCNRCSETFDSYAKRKNHYARTHDIPKVHKCCYCSETFANYGARTLHHRYAHNIDTPIYNCPVCGKTFRLCSGNRPVPAMSLKALSKSSLSATKRNRLGKRNATIILQSCTAVPFKWHRQLYLCFYCHKQFQAFGDLREHNIEHETSNIKSSVSLLRMNDKVKIDVATLSCKLCDYEPKNVDTLVEHLTLVHNKMFEDAEYGVIPYKHRTDSYDCAVCNERFSYFMKLNQHMNTHFGQYVCETCGKLFLSSARRRIHALIHTIDVRCDHCPETFRSIAIKNSHVNKVHESKVKCPHCIETFSNYNQRKMHLKLIHNLGSLHACPVCEKEFSCNSRMEYHLKEVHYKETHFDCSLCEQRFFSNWQLAKHVRVIHVRGTEHQCGVCDKSFARQRTLNEHMKTHSDDTNTKLNLFSDVKPRKYKGCESSSMRRRKNLQILFNNTSIIPFKWRGKYLCFYCSKNLSEYAELRKHTKSHGNCSTLDHSLKVLKGGTNMEIKIDISDVTCEICGGILPSFDDVIDHLKVKHKIEYDKDVDMAIEEYKLADLSCLACDEKFTYFGYLVSHVNNQHPKNCILCDKCNQKFNKKRDLFSHMKNYHREGGYQCDLCPQTFSSLNILRKHRSNRHLTRCNICQLRLPSAALKQKHIELEHPDDGSLQCDNCDKEFHTTTGLRMHARKCKVELFEYAVKKEDYTMDLDQNYVDPAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMRDHTVMEHPVCDVKEKCIKKCRETVTCVKIDVATLACKICFESMTDLDNLLDHLIIKHKANYDKSITTCLQPYRLVKDHMACPNCPNQVFRFFGTLLKHMNKEHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICDAECNIPSRLYMHMAKAHGVRAAKCPKCPETFATQYLRQKHLIEAHNSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNAECSICSMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMTRHNKHFQPLHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01183146;
90% Identity
-
80% Identity
-