Ader017746.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388285.1:1907078-1913381[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.58 29 5.5 0.6 1 23 52 75 52 75 0.94 2 30 2 98 3.8 1.4 3 23 102 123 102 123 0.96 3 30 0.00035 0.017 15.7 1.4 1 23 145 167 145 167 0.99 4 30 0.065 3.3 8.5 2.5 1 23 171 193 171 193 0.96 5 30 0.0047 0.24 12.1 1.4 1 23 226 249 226 249 0.96 6 30 0.0015 0.074 13.7 1.9 1 21 256 276 256 277 0.94 7 30 0.18 8.8 7.1 2.8 1 23 326 349 326 349 0.94 8 30 0.00014 0.0068 16.9 1.1 1 23 418 440 418 440 0.98 9 30 0.53 27 5.6 0.1 1 23 444 466 444 466 0.94 10 30 0.021 1 10.1 2.9 2 23 471 493 470 493 0.96 11 30 0.00044 0.022 15.3 1.5 2 23 498 520 497 520 0.96 12 30 0.029 1.5 9.6 3.7 1 23 526 549 526 549 0.93 13 30 0.015 0.74 10.5 1.3 1 23 555 578 555 578 0.97 14 30 4.6e-06 0.00023 21.5 5.4 1 23 583 605 583 605 0.98 15 30 0.092 4.6 8.0 1.4 1 23 644 666 644 666 0.96 16 30 0.056 2.8 8.7 0.3 2 23 695 717 694 717 0.95 17 30 0.065 3.2 8.5 1.4 3 23 738 760 737 760 0.90 18 30 0.0065 0.32 11.7 5.2 3 23 767 788 766 788 0.97 19 30 0.006 0.3 11.7 1.1 1 23 793 816 793 816 0.95 20 30 0.8 40 5.1 0.1 2 23 819 841 818 841 0.93 21 30 0.0021 0.11 13.2 0.9 2 22 848 868 847 868 0.93 22 30 0.0065 0.32 11.7 0.4 1 23 926 949 926 949 0.92 23 30 0.21 10 6.9 0.1 3 23 978 999 976 999 0.94 24 30 0.072 3.6 8.4 0.2 3 23 1023 1045 1021 1045 0.95 25 30 0.00087 0.044 14.4 0.4 3 20 1052 1069 1050 1073 0.90 26 30 0.031 1.6 9.5 0.4 1 23 1078 1101 1078 1101 0.97 27 30 0.00065 0.032 14.8 0.2 2 23 1107 1129 1107 1129 0.94 28 30 7.2e-05 0.0036 17.8 4.7 1 23 1133 1156 1133 1156 0.97 29 30 0.00093 0.047 14.3 0.7 2 23 1163 1184 1162 1184 0.96 30 30 0.021 1 10.1 2.2 1 23 1190 1212 1190 1212 0.97
Sequence Information
- Coding Sequence
- ATGTCAGGTGCCAAACGTCCCGGGCCCGTGGCGACCGGCGAGGCATCAAAACTCCCAATCACATGCATTAAACGCAACCGCCTAATAAAGATGAACACAATCACTTTACTGCAATACTCAACCGTGATCCCATTTAAATGGCACAGGCAATGCTACCTCTGCTTCTACTGCAACTCCCAACTCAACACGTTCGACGCCCTCAAAACGCACGTCGAAACCGAACACAAAAACACTAACTTGCGTTCTATCGGGGTACTGATTAAGAAAGACGATAAGGTTAAAATTGACGTGGCCAGTATAGGCTGTAAGCTTTGCGACACCAAGCCTAAGGACTTGGACGATCTTGTACACCACTTGAAGAACTCGCACGGGATACTGTTCTACGACGATTTAGGGTACGGGGTAATGCCGTACAAGCACAGTGCGGGTTCTTTCCAGTGCGCAATTTGCAACGAAACCTTCCAGTATTACATCAAGCTAAACCAACACATGAACAAGCATTACGGGCAACATGTGTGCGAGTTTTGCGGCAAATCGTTCCTTAGCACGAGGCGCCTTAAGATCCACACTCTCTCCCACGGCTCCGGGTTCCCCTGCAACCGTTGCACTGATATCTTCGATTCGTACGCTAAGAGGAAGAATCACTACGAGCAGGTCCATGACATAACGAAGATTCACAAGTGCTCGTACTGCCCTGAGACGTTTCCTAACTACGGCGCGCGGACTCTCCACTACCGCTATGCCCACAATGTGGACACGCCGATCTTCAACTGCCCCGTCTGCGGAAAGACTTTCCGTCTCTGCAGCAAAATGCAGTATCACTTGAACAGTGGCAAAAACACTCTACCCGTGAAGTCTCTCAGTACGCCGAGTCATACACTATCGGCCACAAAGCGTAATCGCTTAATGAAGCGAAATGCCACTATAATTCTACAAAATAGCACAGCTGTGCCTTTCAAATGGCACAGGCAGCTCTACTTGTGCTTTTACTGCCACAAACCGTTCCAACTCTTCAACGATCTCAAAGAACACTCGAACACGGAACACGACCACACAAACAAACGGTCATCTGTATCGCTCCTGCGCATGGACAGTACCGTGAAAATCGACGTCGCGTCATGGCTATGCAAGCTATGCGACTTTGAGCCTAAAAACGTAGACGCGATGGTCGATCACTTAAAGCTCGTTCACAGTACAGTCTTCGAAGACGCCGAGAACGGTGTCGTGCCGTACAAGCACCGCGGCGATTCGTACTATTGCGCGGTGTGCGACCAAAGCTTCGTATACTTTATGAAGTTGAACCAGCATATGAACACTCACTTCGGGCGGTACGTTTGTGACGCATGCGGGAAATCCCTCCTCAGCAGCGATAGACTTCGCACCCATGCGTTGCTGCATACCAGTAGCGTGCGCTGCGACCACTGCCGTGAAACTTTCCGCTCGCTGTCCATGAAGAAGTCGCATGTGAACAAAGTGCACGAGTCTAAGGTTAAATGTCCGCATTGCAACGAATCGTTTTCGAGTTACACTTCTAGGAAAGTGCACCTTAAAGTTGTTCACAGCGTTGGTTCGCTGCACGCGTGTCCCGATTGCGGGAAGGAGTTCTCTTGCAACAGCAGAATGGAGCATCATCTAAAGGAGGTGCATTATAAAGAGACGCATTTTAACTGCGGTATGTGTGAACAGAGGTTCTTCTCTAACTGGCGGCTATCGAAGCACGTTCGCTCGAGTCACGCTGCGAAAGAACACCAGTGCGATGTCTGTCGGAAATGTTTTGCTAGGTCGAGCACATTGAATGAGCATATGAAAACGCATAATATTAAACCGCGCACATACAAGGGCAGCGAATCCTCATCGATGCGCAGAAGGAAAAATCTACAAATAGTATTCAACAACACATCTATTATACCTTTTAAATGGAGGGGGAAGTACCTCTGTTTTTACTGCAGTCAAAATCTGTCGGAATACGCAGAGTTAAGGAAACATACTAAATCGCACGGGAATTGTTCCATTCTGGACCATTCGTTGAAAGTCCTTAAGGGAGGCACGAATATGGAAATCAAAATAGACGTATCTGACGTCACATGTCGAATTTGCACAGAAACAGTAACATCTTTCAAAGAATTAGTGGACCATTTAAGAGCAAAGCATAAAATAGATTACGATAAAGATGTTGACATGGCAATTGAAGAGTACAAACTCAGAGATCTTTGCTGTATAACGTGTGATGAGAGGTTTACATACTTCGGGTATTTAGTGTCGCATATGAACAATCAGCATCCAAAAAATTGTATTCTATGCGATAAATGTCACCAGAAGTTCAACAAGAAGAGAGATCTTTTCTCGCACATGAAGAACTATCACAGAGAAGGGGGTTACCAGTGCGATCTGTGCCCGCAGACGTTTAGTTCGCTGAACATACTCCGGAAGCACAGAAGTAACCGCCATCTCACTAGATGCAACATTTGCCAGCTGAGACTCCCCTCTGCGGCCTTGAAACAGAAACATATCGAACTTGAACACCCTGACGACGGCTCCTTGCAATGCGAAAATTGCGATAAAGAGTTTCACACAAAGACTGGGCTCAGGATGCACGCGAGAAAGTGCAAGGTAGATCATTTAGAATTCGCCCTGAAAAAAGAAGATTATACAATGGATCTAGATCAAAACTATGAGGATCCGGCGAAGCGGCCGAGCGTGAAGCAAATTCGGGAAAATATTGTAATAGTCATAAATATGTCGACTGCCATACCTTTCAATTTCTACAAGAATAAATTCAACTGCTTCTATTGCTCAAAAGACTTCCCGGATTCTGACTCCATGAGAGAGCACACGGTTATAGAACATCCAATTTGCGGTGTCAAAGAGAAATGCATAAAAAAGTGCAGAGAAACGGTCACATGCGTCAAAATTGACGTGTCAACTCTAGCGTGCAAGATATGCTTTGAAACTATTAGCGATTTGGACAAACTCCTCGATCATTTGATCATAAAACACAAAGCTAATTACGACAAGTCGATAACGACATGTCTACAGCCTTACAGATTGATCAAAGACCATATGGCGTGCCCGAACTGCCCGAATGAGGTGTTCCGATTCTTCGGCACGCTGCTTAAACACATGAACAAGGAACACACGAATAATAACATTATATGCGTGTACTGCGGCGAAACGTTTCGACGCGACCAGAACCTTCGAGTCCATATATGGCGGCACCATCGCGACGGCAGGTTCAAATGCAACATCTGCGATGCGGAATGCAATATACCGTCCCGTTTGTACATGCACATGGCGAGAGCGCACGGCGTGAGGGCGGCCAAATGCCCCAAGTGCCCGGAAAGCTTCGCCACACAGTACCTTAGGCAGAAGCATCTGATCGAAGCGCACAACTCCGGCCACAAATGCAGTTATTGCGGCAAGCTGTTCACTAGAAACTCCTTTATGCGCGACCACATCCGGCGTACTCATTTAAAGGAGAAGAACGTAGAGTGCTCTATATGTAGCATGAAGTTCTTTAACAATATAATGTTGAGGAGGCATATGGTCAAGCATAGTGGCGAGAAGAACTTTCATTGTGATGTGTGTGGTGAGAGGTTCTTCTGGCGGAAGAGCTTGCGGTCTCACATGGGGAGGCATAGTAAACTTCAATAA
- Protein Sequence
- MSGAKRPGPVATGEASKLPITCIKRNRLIKMNTITLLQYSTVIPFKWHRQCYLCFYCNSQLNTFDALKTHVETEHKNTNLRSIGVLIKKDDKVKIDVASIGCKLCDTKPKDLDDLVHHLKNSHGILFYDDLGYGVMPYKHSAGSFQCAICNETFQYYIKLNQHMNKHYGQHVCEFCGKSFLSTRRLKIHTLSHGSGFPCNRCTDIFDSYAKRKNHYEQVHDITKIHKCSYCPETFPNYGARTLHYRYAHNVDTPIFNCPVCGKTFRLCSKMQYHLNSGKNTLPVKSLSTPSHTLSATKRNRLMKRNATIILQNSTAVPFKWHRQLYLCFYCHKPFQLFNDLKEHSNTEHDHTNKRSSVSLLRMDSTVKIDVASWLCKLCDFEPKNVDAMVDHLKLVHSTVFEDAENGVVPYKHRGDSYYCAVCDQSFVYFMKLNQHMNTHFGRYVCDACGKSLLSSDRLRTHALLHTSSVRCDHCRETFRSLSMKKSHVNKVHESKVKCPHCNESFSSYTSRKVHLKVVHSVGSLHACPDCGKEFSCNSRMEHHLKEVHYKETHFNCGMCEQRFFSNWRLSKHVRSSHAAKEHQCDVCRKCFARSSTLNEHMKTHNIKPRTYKGSESSSMRRRKNLQIVFNNTSIIPFKWRGKYLCFYCSQNLSEYAELRKHTKSHGNCSILDHSLKVLKGGTNMEIKIDVSDVTCRICTETVTSFKELVDHLRAKHKIDYDKDVDMAIEEYKLRDLCCITCDERFTYFGYLVSHMNNQHPKNCILCDKCHQKFNKKRDLFSHMKNYHREGGYQCDLCPQTFSSLNILRKHRSNRHLTRCNICQLRLPSAALKQKHIELEHPDDGSLQCENCDKEFHTKTGLRMHARKCKVDHLEFALKKEDYTMDLDQNYEDPAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVIEHPICGVKEKCIKKCRETVTCVKIDVSTLACKICFETISDLDKLLDHLIIKHKANYDKSITTCLQPYRLIKDHMACPNCPNEVFRFFGTLLKHMNKEHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICDAECNIPSRLYMHMARAHGVRAAKCPKCPESFATQYLRQKHLIEAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICSMKFFNNIMLRRHMVKHSGEKNFHCDVCGERFFWRKSLRSHMGRHSKLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183146;
- 90% Identity
- -
- 80% Identity
- -