Pdid004693.1
Basic Information
- Insect
- Philaethria dido
- Gene Symbol
- znf711
- Assembly
- GCA_033558755.1
- Location
- JAKGSA010000163.1:179595-180983[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 6.3e-06 0.15 12.6 0.1 20 49 171 200 162 203 0.87 2 6 0.0048 1.1e+02 3.4 0.8 21 48 232 258 227 263 0.88 3 6 0.1 2.4e+03 -0.9 0.1 18 46 257 285 255 291 0.81 4 6 1.5e-05 0.35 11.4 0.4 27 44 294 311 289 315 0.92 5 6 0.018 4.2e+02 1.5 0.1 18 53 312 348 311 349 0.77 6 6 0.00015 3.5 8.2 0.1 21 48 369 396 359 399 0.92
Sequence Information
- Coding Sequence
- atgaataaaagttCTTGCCGCTTATGTATAAAAAACCCTGGCTTAGTTTCAATTTATGATGTTAGTGAAGGAATACAACTAAGTAAAACAATAACTTATTGCTGtagcaacataaatattgaagaaaacGATGGACTCCcatcatatatttgtaatttttgtgaATCGGAACTTAAAAATTGCTACTACTTTATAGTAAAATGCGAAGAATCTGATAAAAAATTACGTTCCTCTCAACCTATTTACTTTAATGTAGAATGTGAcgctaaaattgaaataaaaactgaaacaGAAGCCGATCACAATTCTAGTACAGATGGTGTTATTGATACTTCATATGAATCCCCTGCTGAAGAGATTAAACAAGAATTTGATGAAGAAATTAAAagtgttaaaaagaaaaaattaaagatattcaAAAAACGAAAAAGCTCAATAATATCTAAATGCAATGTATGTGGAAGGGTTTGCCCAAATGCCTCAACACTTCTTATACATATGAGATCTCATACAAATGAAAGGCCATATGCTTGCCCATCATGTGATAAAACTTATAAAGACAGTGGTAGTCTCAAAAGGCACACAGAAAGAACTCATTTGAAAGATAAGAGACAGCGTAACTTTATTTGTGAAAATTGTGGAAAaggttttttttctaaaaatgaagtTAAAATTCATATGCGCGTTCATACTGGAGAAACGCCATATGCATGCGCATACTGTCCGGCAAGGTTCACTCAAATAAGTGCCTTACAACGGCATCAGTTTCGTCACACAGGTGAAAGAACACATACATGCTTAACATGTCACAAAAAGTTTTGTACAAAAGATGAACTAAAATCACATTTGGCTGTGCATTCAACAATCAAAAAATTTTTATGCCCAATTTGCAATGCTCTTTTTAAATACAGGAATAACTTAAGGAAACATGTGAGAAGCCACTCAGAGGGTAACaagtttatttgtaattactGTGGGCGTAACTTCAGTATGAAAGGTAATTTGAAGTTGCATATAGAGAGGTTGCACTCATCAAAGTCAGGGTACTGTAATACATGTGTTAAGAATGTATCGAACATGGAAGCCCATATGTGGAAGCATACCGGTGAGAGGCCGTTAAAATGTGAATTATGTGTTAGCAGTTTCTCTGATCAAAACTCTTTGGCTCGGCATATTAATTTTAGGCATAAACAACCAGATAGGTATAAATGTAGTTTTGATGGATGTCCTCTAAAATTTCCCTCAAGGCCAATGTTGGATTTCCATGTGGCAAAGTTACATAGCACTGTTAAACCTTTTCAATGTGATAAATGTTCTAGAGGGTTCTATAGAAAAAGTGACTTAGTAAGACATAAGACAGGTACACACAAAGAAAGACTTGTGGACTAA
- Protein Sequence
- MNKSSCRLCIKNPGLVSIYDVSEGIQLSKTITYCCSNINIEENDGLPSYICNFCESELKNCYYFIVKCEESDKKLRSSQPIYFNVECDAKIEIKTETEADHNSSTDGVIDTSYESPAEEIKQEFDEEIKSVKKKKLKIFKKRKSSIISKCNVCGRVCPNASTLLIHMRSHTNERPYACPSCDKTYKDSGSLKRHTERTHLKDKRQRNFICENCGKGFFSKNEVKIHMRVHTGETPYACAYCPARFTQISALQRHQFRHTGERTHTCLTCHKKFCTKDELKSHLAVHSTIKKFLCPICNALFKYRNNLRKHVRSHSEGNKFICNYCGRNFSMKGNLKLHIERLHSSKSGYCNTCVKNVSNMEAHMWKHTGERPLKCELCVSSFSDQNSLARHINFRHKQPDRYKCSFDGCPLKFPSRPMLDFHVAKLHSTVKPFQCDKCSRGFYRKSDLVRHKTGTHKERLVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00778465;
- 90% Identity
- iTF_01182061;
- 80% Identity
- iTF_01182061;