Hher012791.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius hermathena
Gene Symbol
znf711
Assembly
GCA_013403705.1
Location
JAAIXJ010000122.1:135203-136591[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.00023 2.3 8.6 0.1 20 49 171 200 162 203 0.87
2 5 0.0076 77 3.7 0.4 21 48 232 258 226 261 0.87
3 5 0.00037 3.7 7.9 0.1 26 44 293 311 288 315 0.91
4 5 0.034 3.5e+02 1.6 0.0 18 53 312 348 311 349 0.78
5 5 0.00036 3.7 7.9 0.1 21 48 369 396 360 399 0.92

Sequence Information

Coding Sequence
atgAATAACGGTTCTTGCCGCTTATGTATTAAAAACCCTGGTGAAGTTTCAATATACAGTATCAGTGAgggaatacaaataaataaaaaaattgtatattgttGTGGCAACGTAAATGTTGAAGAAAATGATGGATTACCAACGTTTATTTGTAACTTTTGTGAATGTGAACTTAAAAActgttatgattttatattgaaatgcgAAGAATCTGATAAAAAGTTGCGTTCTACTCAATCTATTTACTTCAGTGTAGAATGTAatacaaaaattgaaataaaaacagaaactGAAATCGATCACGATTCAAGCATAGACGATGTTACTGTGACTCCATATGAATCACCTACTGAAGAAATTAAACAAGAAGtcgatgataaaataaaaactgtaagaAAGCAAAAGGTAAAACTATATAAGAAGCGAAAAAACTCTACGATTTCCAAATGTAATGTATGCGGAAGAGTTTGCCCAAATGCCTCTACACTTGTCATACATATGAGATCTCATACAAACGAAAGGCCATATGCTTGTTCTTCTTGTGAAAAGACTTATAAAGACAGTGGTAGCCTCAAGAGGCATACTGAACGTACACATTTAAAAGATAAGAGGAAACGCAACTTCATTTGTGAAAATTGTGGTAAAGGATTCTTTTCTAAAAATGAAGTTAAAATTCATATGAGAGTTCACACTGGAGAAACTCCTTATGCTTGTGCGTACTGCCCCGCAAGGTTTACGCAAATAAGTGCCCTGCAAAGGCATCAATTCCGACACACAGGTGTAAAAACTCATAAATGTTTAACATGTCTAAAAAAATTTTGTACAAAAGATGAGTTAAATTCACATTCAGCAGTCCATTCAACAATTAAAAAGTTTGTGTGTTCAATTTGTAAtgctctttttaaatttaaaaataacctaaGAAAACATGTTAGAAGTCATTCAGAAGATTATAAGTTCATTTGTAACTATTGTGGTCGTAATTTTAGTATGAAAGGCAATTTGAAATTGCATATAGAGAGGTTGCATTCATCGAAGTCAGGTTATTGTGATATATGTGTgaaaaatgtatcaaatatgGAAGCCCATATGTGGAAACATACTGGAGAAAGGCCCCTTAAATGTGATTTATGTTCTAGTAGCTTCTCTGACCAAAACTCTTTAGCTAGGCATATTAATTTTAGACACAAGCAACCAGATAGGTATAAATGTACTTTCGATGGATGTTCTTTGAAGTTTCCATCGCGGCCAATGTTAGATTTTCATGTGGCAAAATTACATAGTACTGTGAAACCATTTCAATGTGATAAATGTTCTAGGGGATTCTATAGAAAAAGTGATTTAGTTAGACATAAGACAGGTACACATAAAGAAAGGATTATAGACTAA
Protein Sequence
MNNGSCRLCIKNPGEVSIYSISEGIQINKKIVYCCGNVNVEENDGLPTFICNFCECELKNCYDFILKCEESDKKLRSTQSIYFSVECNTKIEIKTETEIDHDSSIDDVTVTPYESPTEEIKQEVDDKIKTVRKQKVKLYKKRKNSTISKCNVCGRVCPNASTLVIHMRSHTNERPYACSSCEKTYKDSGSLKRHTERTHLKDKRKRNFICENCGKGFFSKNEVKIHMRVHTGETPYACAYCPARFTQISALQRHQFRHTGVKTHKCLTCLKKFCTKDELNSHSAVHSTIKKFVCSICNALFKFKNNLRKHVRSHSEDYKFICNYCGRNFSMKGNLKLHIERLHSSKSGYCDICVKNVSNMEAHMWKHTGERPLKCDLCSSSFSDQNSLARHINFRHKQPDRYKCTFDGCSLKFPSRPMLDFHVAKLHSTVKPFQCDKCSRGFYRKSDLVRHKTGTHKERIID