Basic Information

Insect: Pherbina coryleti
Gene Symbol: -
Assembly: GCA_943735905.1
Location: CALSEP010001931.1:78779-84169[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0082 1.3 10.8 0.6 2 23 71 92 70 92 0.96

2 16 0.01 1.7 10.5 3.8 1 23 98 121 98 121 0.91

3 16 0.088 14 7.5 0.1 4 23 127 151 125 151 0.81

4 16 0.0054 0.88 11.3 0.3 1 20 159 178 159 180 0.95

5 16 2.2e-05 0.0035 18.9 1.8 1 23 188 210 188 210 0.98

6 16 0.0069 1.1 11.0 2.6 1 23 216 238 216 238 0.97

7 16 0.0004 0.065 14.9 2.6 1 23 244 266 244 266 0.95

8 16 6.9 1.1e+03 1.6 2.7 2 23 696 718 695 718 0.93

9 16 0.4 64 5.5 0.3 1 23 743 765 743 765 0.93

10 16 0.15 25 6.8 2.6 1 23 773 797 773 797 0.96

11 16 0.48 78 5.2 2.2 3 23 803 823 801 824 0.93

12 16 7.3e-05 0.012 17.2 0.3 2 21 840 859 839 860 0.94

13 16 0.0014 0.22 13.2 0.1 1 23 868 890 868 890 0.97

14 16 1.7e-06 0.00027 22.4 2.4 1 23 896 919 896 919 0.98

15 16 7.7e-05 0.013 17.2 1.4 1 23 925 947 925 947 0.98

16 16 0.00021 0.034 15.8 2.2 1 23 953 975 953 975 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0082	1.3	10.8	0.6	2	23	71	92	70	92	0.96
2	16	0.01	1.7	10.5	3.8	1	23	98	121	98	121	0.91
3	16	0.088	14	7.5	0.1	4	23	127	151	125	151	0.81
4	16	0.0054	0.88	11.3	0.3	1	20	159	178	159	180	0.95
5	16	2.2e-05	0.0035	18.9	1.8	1	23	188	210	188	210	0.98
6	16	0.0069	1.1	11.0	2.6	1	23	216	238	216	238	0.97
7	16	0.0004	0.065	14.9	2.6	1	23	244	266	244	266	0.95
8	16	6.9	1.1e+03	1.6	2.7	2	23	696	718	695	718	0.93
9	16	0.4	64	5.5	0.3	1	23	743	765	743	765	0.93
10	16	0.15	25	6.8	2.6	1	23	773	797	773	797	0.96
11	16	0.48	78	5.2	2.2	3	23	803	823	801	824	0.93
12	16	7.3e-05	0.012	17.2	0.3	2	21	840	859	839	860	0.94
13	16	0.0014	0.22	13.2	0.1	1	23	868	890	868	890	0.97
14	16	1.7e-06	0.00027	22.4	2.4	1	23	896	919	896	919	0.98
15	16	7.7e-05	0.013	17.2	1.4	1	23	925	947	925	947	0.98
16	16	0.00021	0.034	15.8	2.2	1	23	953	975	953	975	0.95

Sequence Information

Coding Sequence: ATGTTGTTGTGGCGCAGATACTGCGGAATCATCAAGCTCATTACTTCGTGTCTTTTGCTTAAAAACTCTGACGCTTCAACATCGAAAACAGCAGCTGAAGCTGCATCCACTGCTGCTGCAAAACCCGATTCAACAACTTCATCAAGTGCAGCCAATGCAGCCATCCAAGCGATGATGGTGCAAATCACCACAGATGGTGTGCCCAAATTGCATTGTCCTGTCTGCAATAAGGCGCTCGTTTCGCTAAATGGCTATGTGAAGCATTTGAAAAAACACGAACCGCCAGGTGGCTTCCATTGTCGCTACTGTGAAGCTCGTTTCTGCTCCGAAGATGAATTGAAAAAACATCGTGACGCAGAGCACACAACCATTGCATGTCGCATCTGCAAGGACATTCAGGGCTTGACATTCACCAATGAAGATGATTATCGCGAACATATACGTGTCGTTCACAACGGCATTGATCGTGAGTTGTTCACGTGCGAAAAATGCGGTGCCGAGTACAAGACTTTGGAACCATTTAAACGACATCAGGAGAACAAATGCGGCACCATTaagcctttcaaatgcgatgagtgtgaaatggcattctataccaagtataatcttaaacagcacaaagttacacattccggtgagcgtcgctactgttgcagctattgtggcaagaactttctgcagaaggggcggctggtagagcatgagcgttcacacacgggcgaaaagccatacaaatgcgatGTCTGCGGTAAATGCTTTGCTCATCGCGAAAGCATTGTTACACATTCCTCAATACATACGGGCATCAAACTGGTCGAGTGCCGCTGCTGTCTCTCACGTTTCAGCTGCTATTCAAATCTAATCAAACATCGACGCTCAAGACCAGAAACATGCGGTCTGCCAGAATACAATCCGCCTAAGAATCGAGTGCGCACGTGCAGACCTAGAATTCCACCCACCATGAATCCCACTTCCGAAATCAAGGTCATCAACATGAATAAGATTATTAAACCTGCAGATAAAATCAACGAAAAAAAGACAAGACGCACTAAGAAAGAAATAAAAGAAAATGCAGCGGAGGCAAAACCTAAAGTAAAACGTGCACCGCGCGGCAAACTTAAGCCGAAACCGGAAACAGAGTCAGAGGCGGCGTCAACAAGTGACGACGAAGAGGAAACATTACTTAAAGTAATGCCAAAACGTGCCACACGCACTCGAGCCGCAAAGCTTAATGCAGCGCCAAAAGAGGAAAATATAGTCACTGAGAAAAAGGAAAATTTTATCAACTCTACCAACACTTCGCCGTCTGCAGAAACACCTAAACTCAAAATCGAACGCAAGCCAATTTGGAGTGAGGACTCCGAATCGGCTGAAGAATATCCAGATTTTGAGCCCGATAACAACGATTCGGAAAGCGATGCGGATCAGGCACTGGAACCGAAGCTGCCACAGCCAATAATGCCTATAAAACAGGAGCAACCCGAAGATGCAACAACCACATCATCAAATGATTTCGAGTATACAAATGCTCACGCCTTCGTCAACACCGAACTAAATGTTAAGTCCGAAGATGAACAAAATATATTCAATGAAAAAGACAAGCTGCTCGATTGTCTGCTGAACGATGACGAGCTTGAGTTTACAGAAATGAATCCAACAAAAACTCGTGCCGAGCGTAAATTGCCCACATTCGATGTAGTCAAAGTGGAGAGTCTGCTGGAAGATAGTGAAGTTGTCTATATTAAGGATGAGGAACAGGTGGAGGATATGCTAAACTGCAACAATCTCTCCTCCGGTGAGGTCACGACGGCCTGTAAAATCGTTCTAGAAGATGTCACGCAGCGTTATCCAAAACTTAAGGAAGACACTACAGTAAAAATAACACGCTCTTCAAAACCCATCCAACGCCTTGCAATGCGTCGTCGTAGAGAGATGGAAAAAAATCTGCGCAAACCCAGACGCAAATATCGTAAACGTAACGAACCGAAAGAAGTGGATTTGGCACGTGCACCAAAGCGCATGGCAAAACTTTCCCAATCCGAAGTCAAGGAACGCTTAAAACTGATCAAGAAAGAGAAATCGTGGCAGTGTCCACATTGCATAAAATTTTATCACATACGTAAGCCATTCGAAAAGCATTTACGCGACGAGCACAAGCTCTCCGAGACAGATTTGAAGCAAATCTTTAAGGAAGAAGCAGAAATTGGTATTCTAGATGATGAAATATTCAGGTGCCAGATTTGTTCGAAAATCTATTTGGTGGAGAAACGGCTGCTGGCCCACATACAACTGCACGGTCCTGACGGCACACTTGTGCACAAGTGCCCTTGCTACTGCTCCATTTACTTTGCCACCAAGGAAGAGGCACAGGATCATGCGCGCCAGACACACAAAGAGCTGCTGTTCTGCGAGATATGCGAAAAATATATGACTGGCCACGATAGCCTTAAAAATCATCGCGCCATACATCATAGCGGTGACAAGAGTGCTGTGCAACGCAACGCGGAACGCAATTTGGTCTGTGATAAATGCGGCAAAAAGTATTCAAGTCGCACCTCACTCACTGATCATGTGCGCTCCGACTGCGGCCGAATACCGCTCTATCCGTGCACAATATGTGGTAAGCGATTAACAACGGCTGGTATACTTAAAACACATCTATTGCTGCACAAAGAAGATACACCCTATCAGTGTGACCAGTGCGGCAAGACGTTCAAAGTTAAAGCTCAGTACAAATCGCATCTTAAGACGCGACACACCGACTACAAGCCGTTTAAGTGTCATCTCTGTCCCAAGGAGTATCCCTACCGTGAAAGTCTGCTCACACACATGACTGTGCATACGGGCATAAAACGTTTTCTCTGCAATGGCTGTGGCAAACGCTTCACCTGCATTTCAAATCTGCAAGCGCATCGCAAAGTGCACGCTGAAACCTGCGGCGCACTGCCGCTTAACGCCAAGGCCACTCAATACATGGGCGTACAAAAGGGTAACCTTCTTTTGGGCGCTAAGCCAGAAGCAGGGCTCGATTATAAAGAAACAAATACATTGATTGCGCGCGATGTTATCGACCGTGATCAACCAATGGCTCAGGAATTAAATTATCCCTCGGAACCCTGTGCAGCACTAGGTACACAGCCACTTAACTATGCACAAACGGCCCCACCACATTTGTTGTTGCCACAACTAATGATGCCAACATTCATTGATGATTCGCATTCTTCGTATTGA
Protein Sequence: MLLWRRYCGIIKLITSCLLLKNSDASTSKTAAEAASTAAAKPDSTTSSSAANAAIQAMMVQITTDGVPKLHCPVCNKALVSLNGYVKHLKKHEPPGGFHCRYCEARFCSEDELKKHRDAEHTTIACRICKDIQGLTFTNEDDYREHIRVVHNGIDRELFTCEKCGAEYKTLEPFKRHQENKCGTIKPFKCDECEMAFYTKYNLKQHKVTHSGERRYCCSYCGKNFLQKGRLVEHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGIKLVECRCCLSRFSCYSNLIKHRRSRPETCGLPEYNPPKNRVRTCRPRIPPTMNPTSEIKVINMNKIIKPADKINEKKTRRTKKEIKENAAEAKPKVKRAPRGKLKPKPETESEAASTSDDEEETLLKVMPKRATRTRAAKLNAAPKEENIVTEKKENFINSTNTSPSAETPKLKIERKPIWSEDSESAEEYPDFEPDNNDSESDADQALEPKLPQPIMPIKQEQPEDATTTSSNDFEYTNAHAFVNTELNVKSEDEQNIFNEKDKLLDCLLNDDELEFTEMNPTKTRAERKLPTFDVVKVESLLEDSEVVYIKDEEQVEDMLNCNNLSSGEVTTACKIVLEDVTQRYPKLKEDTTVKITRSSKPIQRLAMRRRREMEKNLRKPRRKYRKRNEPKEVDLARAPKRMAKLSQSEVKERLKLIKKEKSWQCPHCIKFYHIRKPFEKHLRDEHKLSETDLKQIFKEEAEIGILDDEIFRCQICSKIYLVEKRLLAHIQLHGPDGTLVHKCPCYCSIYFATKEEAQDHARQTHKELLFCEICEKYMTGHDSLKNHRAIHHSGDKSAVQRNAERNLVCDKCGKKYSSRTSLTDHVRSDCGRIPLYPCTICGKRLTTAGILKTHLLLHKEDTPYQCDQCGKTFKVKAQYKSHLKTRHTDYKPFKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCISNLQAHRKVHAETCGALPLNAKATQYMGVQKGNLLLGAKPEAGLDYKETNTLIARDVIDRDQPMAQELNYPSEPCAALGTQPLNYAQTAPPHLLLPQLMMPTFIDDSHSSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01415250;
90% Identity: iTF_01181360;
80% Identity: -