Basic Information

Insect: Pherbina coryleti
Gene Symbol: -
Assembly: GCA_943735905.1
Location: CALSEP010001159.1:5703-10844[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0077 1.3 10.9 0.6 2 23 14 35 13 35 0.96

2 16 0.0097 1.6 10.6 3.8 1 23 41 64 41 64 0.91

3 16 0.083 13 7.6 0.1 4 23 70 94 68 94 0.81

4 16 0.0051 0.83 11.4 0.3 1 20 102 121 102 123 0.95

5 16 2e-05 0.0033 19.0 1.8 1 23 131 153 131 153 0.98

6 16 0.0065 1.1 11.1 2.6 1 23 159 181 159 181 0.97

7 16 0.00037 0.061 15.0 2.6 1 23 187 209 187 209 0.95

8 16 6.5 1.1e+03 1.7 2.7 2 23 639 661 638 661 0.93

9 16 0.37 61 5.6 0.3 1 23 686 708 686 708 0.93

10 16 0.14 23 6.9 2.6 1 23 716 740 716 740 0.96

11 16 0.45 73 5.3 2.2 3 23 746 766 744 767 0.93

12 16 6.9e-05 0.011 17.3 0.3 2 21 783 802 782 803 0.94

13 16 0.0013 0.21 13.3 0.1 1 23 811 833 811 833 0.97

14 16 1.6e-06 0.00025 22.5 2.4 1 23 839 862 839 862 0.98

15 16 7.2e-05 0.012 17.2 1.4 1 23 868 890 868 890 0.98

16 16 0.0002 0.032 15.9 2.2 1 23 896 918 896 918 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0077	1.3	10.9	0.6	2	23	14	35	13	35	0.96
2	16	0.0097	1.6	10.6	3.8	1	23	41	64	41	64	0.91
3	16	0.083	13	7.6	0.1	4	23	70	94	68	94	0.81
4	16	0.0051	0.83	11.4	0.3	1	20	102	121	102	123	0.95
5	16	2e-05	0.0033	19.0	1.8	1	23	131	153	131	153	0.98
6	16	0.0065	1.1	11.1	2.6	1	23	159	181	159	181	0.97
7	16	0.00037	0.061	15.0	2.6	1	23	187	209	187	209	0.95
8	16	6.5	1.1e+03	1.7	2.7	2	23	639	661	638	661	0.93
9	16	0.37	61	5.6	0.3	1	23	686	708	686	708	0.93
10	16	0.14	23	6.9	2.6	1	23	716	740	716	740	0.96
11	16	0.45	73	5.3	2.2	3	23	746	766	744	767	0.93
12	16	6.9e-05	0.011	17.3	0.3	2	21	783	802	782	803	0.94
13	16	0.0013	0.21	13.3	0.1	1	23	811	833	811	833	0.97
14	16	1.6e-06	0.00025	22.5	2.4	1	23	839	862	839	862	0.98
15	16	7.2e-05	0.012	17.2	1.4	1	23	868	890	868	890	0.98
16	16	0.0002	0.032	15.9	2.2	1	23	896	918	896	918	0.95

Sequence Information

Coding Sequence: ATGATGGTGCAAATCACCACAGATGGTGTGCCCAAATTGCATTGTCCTGTCTGCAATAAGGCGCTCGTTTCGCTAAATGGCTATGTGAAGCATTTGAAAAAACACGAACCGCCAGGTGGCTTCCATTGTCGCTACTGTGAAGCTCGTTTCTGCTCCGAAGATGAATTGAAAAAACATCGTGACGCAGAGCACACAACCATTGCATGTCGCATCTGCAAGGACATTCAGGGCTTGACATTCACCAATGAAGATGATTATCGCGAACATATACGTGTCGTTCACAACGGCATTGATCGTGAGTTGTTCACGTGCGAAAAATGCGGTGCCGAGTACAAGACTTTGGAACCATTTAAACGACATCAGGAGAACAAATGCGGCACCATTAAGCCTTTCAAATGCGATGAGTGTGAAATGGCATTCTATACCAAGTATAATCTTAAACAGCACAAAGTTACACATTCCGGTGAGCGTCGCTACTGTTGCAGCTATTGTGGCAAGAACTTTCTGCAGAAGGGGCGGCTGGTAGAGCATGAGCGTTCACACACGGGCGAAAAGCCATACAAATGCGATGTCTGCGGTAAATGCTTTGCTCATCGCGAAAGCATTGTTACACATTCCTCAATACATACGGGCATCAAACTGGTCGAGTGCCGCTGCTGTCTCTCACGTTTCAGCTGCTATTCAAATCTAATCAAACATCGACGCTCAAGACCAGAAACATGCGGTCTGCCAGAATACAATCCGCCTAAGAATCGAGTGCGCACGTGCAGACCAAGAATTCCACCCACCATGAATCCCACTTCCGAAATCAAGGTCATCAACATGAATAAGATTATTAAACCTGCAGATAAAATCAACGAAAAAAAGACAAGACGCACTAAGAAAGAAATAAAAGAAAATGCAGCGGAGGCAAAACCTAAAGTAAAACGTGCACCGCGCGGCAAACTTAAGCCGAAGCCGGAAACAGAGTCAGAGGCGGCGTCAACAAGTGACGACGAAGAGGAAACATTACTTAAAGTAATGCCAAAACGTGCCACACGCACTCGAGCCGCAAAGCTTAATGCAGCGCCAAAAGAGGAAAATATAGTCACTGAGAAAAAGGAAAATTTTATCAACTCTACCAACACTTCGCCGTCTGCAGAAACACCTAAACTCAAAATCGAACGCAAGCCAATTTGGAGTGAGGACTCCGAATCGGCTGAAGAATATCCAGATTTTGAGCCCGATAACAACGATTCGGAAAGCGATGCGGATCAGACACTGGAATCGAAGCTGCCACAGCCAATAATGCCTATAAAACAGGAGCAACCCGAAGATGCAACAACCACATCATCAAATGATTTCGAGTATACAAATGCTCACGCCTTCGTCAACACCGAACTAAATGTTAAGTCCGAAGATGAACAAAATATATTCAATGAAAAAGACAAGCTGCTCGATTGTCTGCTTAACGATGACGAGCTTGAGTTTACAGAAATGAATCCAACAAAAACTCGTGCCGAGCGTAAATTGCCCACATTCGACGTAGTCAAAGTGGAGAGTCTGCTGGAAGATAGTGAAGTTGTCTATATTAAGGATGAGGAACAGGTGGAGGATATGCTAAACTGCAACAATCTCTCCTCCGGTGAGGTCACGACGGCCTGTAAAATCGTTCTAGAAGATGTCACGCAGCGTTATCCAAAACTTAAGGAAGACACTACAGTAAAAATAACACGCTCTTCAAAACCCATCCAACGCCTTGCAATGCGTCGTCGTAGAGAGATGGAAAAAAATCTGCGCAAACCCAGACGCAAATATCGTAAACGTAACGAACCGAAAGAAGTGGATTTGGCACGTGCACCAAAGCGCATGGCAAAACTTTCCCAATCCGAAGTCAAGGAACGCTTAAAACTGATCAAGAAAGAGAAATCGTGGCAGTGTCCACATTGCATAAAATTTTATCACATACGTAAGCCATTCGAAAAGCATTTACGCGACGAGCACAAGCTCTCCGAGACAGATTTGAAGCAAATCTTTAAGGAAGAAGCAGAAATTGGTATTCTAGATGATGAAATATTCAGGTGCCAGATTTGTTCGAAAATCTATTTGGTGGAGAAACGGCTGCTGGCCCACATACAACTGCACGGTCCTGACGGCACACTTGTGCACAAGTGCCCTTGCTACTGCTCCATTTACTTTGCCACCAAGGAAGAGGCACAGGATCATGCGCGCCAGACACACAAAGAGCTGCTGTTCTGCGAGATATGCGAAAAATATATGACTGGCCACGATAGCCTTAAAAATCATCGCGCCATACATCATAGCGGTGACAAGAGTGCTGTGCAACGGAACGCGGAACGCAATTTGGTCTGTGATAAATGCGGCAAAAAGTATTCAAGTCGCACCTCACTCACCGATCATGTGCGCTCCGACTGCGGCCGAATACCGCTCTATCCGTGCACAATATGTGGTAAGCGATTAACAACGGCTGGTATACTTAAAACACATCTATTGCTGCACAAAGAAGATACACCCTATCAGTGTGACCAGTGCGGCAAGACGTTCAAAGTTAAAGCTCAGTACAAATCGCATCTTAAGACGCGACACACCGACTACAAGCCGTTTAAGTGTCATCTCTGTCCCAAGGAGTATCCCTACCGTGAAAGTCTGCTCACACACATGACTGTGCATACGGGCATAAAACGTTTTCTCTGCAATGGCTGTGGCAAACGCTTCACCTGCATTTCAAATCTGCAAGCGCATCGCAAAGTGCACGCTGAAACCTGCGGCGCACTGCCGCTTAACGCCAAGGCCACTCAATACATGGGCGTACAAAAGGGTAACCTTCTTTTGGGCGCTAAGCCAGAAGCAGGGCTCGATTATAAAGAAACAAATACATTGATTGCGCGCGATGTTATCGACCGTGATCAACCAATGGCTCAGGAATTAAATTATCCCTCGGAACCCTGTGCAGCACTAGGTACACAGCCACTTAACTATGCACAAACGGCCCCACCACATTTGTTGTTGCCACAACTAATGATGCCAACATTCATTGATGATTCGCATTCTTCGTATTGA
Protein Sequence: MMVQITTDGVPKLHCPVCNKALVSLNGYVKHLKKHEPPGGFHCRYCEARFCSEDELKKHRDAEHTTIACRICKDIQGLTFTNEDDYREHIRVVHNGIDRELFTCEKCGAEYKTLEPFKRHQENKCGTIKPFKCDECEMAFYTKYNLKQHKVTHSGERRYCCSYCGKNFLQKGRLVEHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGIKLVECRCCLSRFSCYSNLIKHRRSRPETCGLPEYNPPKNRVRTCRPRIPPTMNPTSEIKVINMNKIIKPADKINEKKTRRTKKEIKENAAEAKPKVKRAPRGKLKPKPETESEAASTSDDEEETLLKVMPKRATRTRAAKLNAAPKEENIVTEKKENFINSTNTSPSAETPKLKIERKPIWSEDSESAEEYPDFEPDNNDSESDADQTLESKLPQPIMPIKQEQPEDATTTSSNDFEYTNAHAFVNTELNVKSEDEQNIFNEKDKLLDCLLNDDELEFTEMNPTKTRAERKLPTFDVVKVESLLEDSEVVYIKDEEQVEDMLNCNNLSSGEVTTACKIVLEDVTQRYPKLKEDTTVKITRSSKPIQRLAMRRRREMEKNLRKPRRKYRKRNEPKEVDLARAPKRMAKLSQSEVKERLKLIKKEKSWQCPHCIKFYHIRKPFEKHLRDEHKLSETDLKQIFKEEAEIGILDDEIFRCQICSKIYLVEKRLLAHIQLHGPDGTLVHKCPCYCSIYFATKEEAQDHARQTHKELLFCEICEKYMTGHDSLKNHRAIHHSGDKSAVQRNAERNLVCDKCGKKYSSRTSLTDHVRSDCGRIPLYPCTICGKRLTTAGILKTHLLLHKEDTPYQCDQCGKTFKVKAQYKSHLKTRHTDYKPFKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCISNLQAHRKVHAETCGALPLNAKATQYMGVQKGNLLLGAKPEAGLDYKETNTLIARDVIDRDQPMAQELNYPSEPCAALGTQPLNYAQTAPPHLLLPQLMMPTFIDDSHSSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01415250;
90% Identity: iTF_01181361;
80% Identity: -