Basic Information

Insect: Pherbina coryleti
Gene Symbol: -
Assembly: GCA_943735905.1
Location: CALSEP010000172.1:20437-58574[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.5e-05 0.004 18.7 2.1 1 23 294 316 294 316 0.97

2 18 1.1e-05 0.0017 19.9 0.4 1 23 322 344 322 344 0.97

3 18 0.00051 0.084 14.6 0.5 1 23 350 372 350 372 0.96

4 18 1.7e-05 0.0028 19.2 3.1 1 23 378 400 378 400 0.97

5 18 3.9e-05 0.0064 18.1 4.7 1 23 406 428 406 428 0.99

6 18 7.2e-05 0.012 17.3 5.7 1 23 434 456 434 456 0.97

7 18 3.4e-07 5.5e-05 24.6 4.3 1 23 462 484 462 484 0.98

8 18 1.3e-07 2e-05 25.9 2.4 1 23 490 512 490 512 0.97

9 18 7.3e-05 0.012 17.2 6.7 1 23 518 540 518 540 0.97

10 18 2.1e-05 0.0034 18.9 6.5 1 23 546 568 546 568 0.98

11 18 3.6e-06 0.00058 21.4 4.5 1 23 574 596 574 596 0.98

12 18 4.3e-05 0.0069 18.0 8.3 1 23 602 624 602 624 0.98

13 18 2.1e-06 0.00034 22.1 7.7 1 23 630 652 630 652 0.98

14 18 7.5e-07 0.00012 23.5 7.7 1 23 658 680 658 680 0.98

15 18 0.00024 0.038 15.6 9.5 1 23 686 709 686 709 0.95

16 18 0.0002 0.032 15.9 0.5 1 23 715 737 715 737 0.97

17 18 0.00089 0.14 13.8 4.4 1 23 747 769 747 769 0.98

18 18 1e-05 0.0017 19.9 1.6 1 23 775 798 775 798 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.5e-05	0.004	18.7	2.1	1	23	294	316	294	316	0.97
2	18	1.1e-05	0.0017	19.9	0.4	1	23	322	344	322	344	0.97
3	18	0.00051	0.084	14.6	0.5	1	23	350	372	350	372	0.96
4	18	1.7e-05	0.0028	19.2	3.1	1	23	378	400	378	400	0.97
5	18	3.9e-05	0.0064	18.1	4.7	1	23	406	428	406	428	0.99
6	18	7.2e-05	0.012	17.3	5.7	1	23	434	456	434	456	0.97
7	18	3.4e-07	5.5e-05	24.6	4.3	1	23	462	484	462	484	0.98
8	18	1.3e-07	2e-05	25.9	2.4	1	23	490	512	490	512	0.97
9	18	7.3e-05	0.012	17.2	6.7	1	23	518	540	518	540	0.97
10	18	2.1e-05	0.0034	18.9	6.5	1	23	546	568	546	568	0.98
11	18	3.6e-06	0.00058	21.4	4.5	1	23	574	596	574	596	0.98
12	18	4.3e-05	0.0069	18.0	8.3	1	23	602	624	602	624	0.98
13	18	2.1e-06	0.00034	22.1	7.7	1	23	630	652	630	652	0.98
14	18	7.5e-07	0.00012	23.5	7.7	1	23	658	680	658	680	0.98
15	18	0.00024	0.038	15.6	9.5	1	23	686	709	686	709	0.95
16	18	0.0002	0.032	15.9	0.5	1	23	715	737	715	737	0.97
17	18	0.00089	0.14	13.8	4.4	1	23	747	769	747	769	0.98
18	18	1e-05	0.0017	19.9	1.6	1	23	775	798	775	798	0.96

Sequence Information

Coding Sequence: ATGAATGTAAGCCAGCCAACAAACAAAGGAACTTCATCGTTGTCAATCACAAAGGCTGTAACTGAAAGCGAATCTAATAGTCATAACGGCAGTGGTGTAACATCACTGCAAATACCACAACCAATGTTGACTAACGCATCAATTGCGCAACAGCTACCGAATGGTACAATCATAACACAGAGACATCCTTCAGCAGAACAGCAACAGATGCACGTTCATGCAGCGATGTCTACTTCTGATGATAATAGACAACATGTTCCACAACAGCATGTTGCTATTCAGCAACAACAACCCCACCAACAGGATAATTCAAAAGATGATAAATCTTATTCCGCTAATGGTAAGGTAAACCAACAAATGATTATACAGCAAGTTTCCGCATCAACAACCCCGACAACATCCTCTGGAGGTGGAGGAACTACCATTACACTTGGATCCACGAAAGTTGAGCAAAAGGATCAACATGATCAACAGATGGGTAAACCACCACCAGGAATAGAGATGTACAAAGTCAACATTGAAGATATTTCCCAATTATTTACTTACCATGAAGTTTTTGGAAAGATCCATGGTGAAGTTATGAATCATCAAATTTCCGCACATTCAGTTGCGCATCCCAACACAGCCACTATAACAACAGCCGGAAATTCTGCAGCTACAATTTCAACAACAAACACAACTTCGGGCTCTGGTATCACTCCACCTGCAACTACGTCCAATCTAACAGCAACAATCGCTAGTGGAACGACAACAGTAACAGCGGCTGGCGATGTAACAACAGGCGAACTTCTTATGCCTAAAATGGAGGGTGGCCTCGCTGTTGATCAAGCAACCACAATAACATTAGCACCTGATGGAACTCCCATTGCTACTGGTAACCACGTCTGTGACATTTGCGGAAAGATGTTCCAATTTCGCTATCAACTTATTGTGCATCGACGCTACCACAGTGAACGCAAGCCATTTAATTGCCAAGTGTGTGGACAAGGCTTCACGACATCGCAGGACTTGACGCGTCATGGAAAGATTCACATTGGAGGGCCAATGTTTACATGTATTATTTGTTTCAATGTTTTTGCGAATAACGCGAGCCTTGAGCGTCATATGAAACGTCATTCGACTGACAAACCATTCGCTTGTACCATTTGCCAAAAGACATTTGCACGCAAAGAGCATTTGGATAATCACTTTAGATCACATACTGGCGAAACACCTTTTCGTTGTCAGTACTGTGCCAAAACATTCACTCGTAAAGAACACATGGTGAACCATGTACGAAAACATACTGGGGAGACTCCACATCGTTGCGATATATGCAAGAAATCGTTTACGCGTAAAGAACATTATGTCAATCATTATATGTGGCACACAGGGCAAACTCCGCACCAATGCGAAGTTTGTGGAAAAAAGTACACTAGAAAAGAGCATTTGGCCAATCATATGCGTTCTCACACTAATGATACACCCTTTCGATGTGAGATATGCGGCAAGAGTTTCAGTCGGAAAGAACATTTCACTAATCACATTTTGTGGCACACAGGAGAAACACCTCATCGTTGTGACTTTTGCTCCAAAACTTTTACACGCAAGGAACATTTGCTTAATCATGTTCGGCAGCATACCGGTGAGTCCCCGCATCGCTGCACGTACTGCTTAAAGACCTTTACACGGAAGGAACACCTTGTTAATCACATACGCCAACACACTGGTGAGACACCCTTCAAATGTACCTACTGTACCAAAGCGTTTACTCGCAAAGATCACATGGTTAACCACATACGTCAACATACTGGCGAGTCACCACACAAGTGCACCTTCTGCACTAAGACTTTCACGCGCAAAGAACATTTAACAAACCATGTGCGCCAACATACTGGCGAATCGCCACATCGTTGTAGCTACTGCAAGAAAACTTTCACCCGAAAGGAGCACTTGACCAATCACATTCGCCTTCACACCGGCGATTCACCACACAAGTGTGAGTATTGTCAAAAGACATTCACACGTAAAGAGCATCTCAACAACCACATGCGTCAACATTCAAGTGACAATCCACATTGTTGCAACGTATGCAACAAACCGTTTACACGCAAAGAACATCTTATAAATCATATGTCTAGATGTCACACTGGTGATCGTCCTTTTGCATGTGAAACATGTGGCAAATCTTTTCCTTTAAAGGGAAATTTGCTTTTCCATCAACGCAGTCATACCAAGGGACAAGAATGTGAACGCCCATTTTCTTGCGAAAAATGTCCCAAAAATTTTATTTGTAAAGGACATCTTGTTTCTCATATGCGTTCACATTCAGGAGAAAAGCCACATGCTTGCACTTTGTGTAGCAAGGCATTTGTTGAGCGTGGAAATTTGAAGAGGCATATGAAAATGAATCACCCTGATGCGGTTATGCCACCCCCACCAGTACCGCATCCACAAATTCCAGCTGGAATACTGACATCAATTAAACAAGAAATAAATCCGATTATAATTCCTCATCAAGCACCAACTATGCATACCATACAACAAATCACAGCCAGTGCTTCTGGAGCTGGAGCTCCCAATAATATTCAATTAGCTCCTGGACTTGTGCCTCTTGTTACCTcaacaatcacttcacacaataatcaaaaacaacagcagcagcaacaacaacagcagcagcaacaacaacagcaacaacaacaacaacagcaacaacaacaacaacagcagcaacaacaacagcaagcgcaacaacaacatcagcaacaacaacaacaagcacaacagcatcagcaacaacaattgcaacagcaacaattacttcagctctccatacaacaagcggcccaccatcaacaccaacaacagcaacaacaacagcagcagcaacaacaacagcagcagcaacaacaacagcagcaagaacaacatcgtcaacatcaacaacaacaagctcaccatcagcaacaacaagccgcacaacaagctcatccacaatcacagccgcctcaagtgccgatcgcattaatacaagccgatccaagcgcattagcacgcgcagcTATGCAGCTCCAACATTTACCAGCAAACGTTGAGCAACATCCGGTGGTTTATTAA
Protein Sequence: MNVSQPTNKGTSSLSITKAVTESESNSHNGSGVTSLQIPQPMLTNASIAQQLPNGTIITQRHPSAEQQQMHVHAAMSTSDDNRQHVPQQHVAIQQQQPHQQDNSKDDKSYSANGKVNQQMIIQQVSASTTPTTSSGGGGTTITLGSTKVEQKDQHDQQMGKPPPGIEMYKVNIEDISQLFTYHEVFGKIHGEVMNHQISAHSVAHPNTATITTAGNSAATISTTNTTSGSGITPPATTSNLTATIASGTTTVTAAGDVTTGELLMPKMEGGLAVDQATTITLAPDGTPIATGNHVCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAVMPPPPVPHPQIPAGILTSIKQEINPIIIPHQAPTMHTIQQITASASGAGAPNNIQLAPGLVPLVTSTITSHNNQKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAQQQHQQQQQQAQQHQQQQLQQQQLLQLSIQQAAHHQHQQQQQQQQQQQQQQQQQQQQQEQHRQHQQQQAHHQQQQAAQQAHPQSQPPQVPIALIQADPSALARAAMQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00258184; iTF_00624904; iTF_00366641; iTF_01201043; iTF_00972407; iTF_01486493;
90% Identity: -
80% Identity: -