Basic Information

Insect: Meiosimyza platycephala
Gene Symbol: -
Assembly: GCA_963662105.1
Location: OY759210.1:10493191-10501178[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.5e-05 0.0034 18.6 2.1 1 23 488 510 488 510 0.97

2 15 1.5e-05 0.0014 19.7 0.4 1 23 516 538 516 538 0.97

3 15 0.00073 0.07 14.4 0.5 1 23 544 566 544 566 0.96

4 15 2.4e-05 0.0023 19.1 3.1 1 23 572 594 572 594 0.97

5 15 5.6e-05 0.0053 17.9 4.7 1 23 600 622 600 622 0.99

6 15 0.0001 0.0097 17.1 5.7 1 23 628 650 628 650 0.97

7 15 4.8e-07 4.6e-05 24.4 4.3 1 23 656 678 656 678 0.98

8 15 1.8e-07 1.7e-05 25.8 2.4 1 23 684 706 684 706 0.97

9 15 0.0001 0.01 17.1 6.7 1 23 712 734 712 734 0.97

10 15 2.9e-06 0.00027 22.0 7.9 1 23 740 762 740 762 0.98

11 15 1.1e-06 0.0001 23.3 7.7 1 23 768 790 768 790 0.98

12 15 0.00033 0.032 15.5 9.5 1 23 796 819 796 819 0.95

13 15 0.00028 0.027 15.7 0.5 1 23 825 847 825 847 0.97

14 15 0.00057 0.054 14.8 4.5 1 23 857 879 857 879 0.99

15 15 1.5e-05 0.0014 19.7 1.6 1 23 885 908 885 908 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.5e-05	0.0034	18.6	2.1	1	23	488	510	488	510	0.97
2	15	1.5e-05	0.0014	19.7	0.4	1	23	516	538	516	538	0.97
3	15	0.00073	0.07	14.4	0.5	1	23	544	566	544	566	0.96
4	15	2.4e-05	0.0023	19.1	3.1	1	23	572	594	572	594	0.97
5	15	5.6e-05	0.0053	17.9	4.7	1	23	600	622	600	622	0.99
6	15	0.0001	0.0097	17.1	5.7	1	23	628	650	628	650	0.97
7	15	4.8e-07	4.6e-05	24.4	4.3	1	23	656	678	656	678	0.98
8	15	1.8e-07	1.7e-05	25.8	2.4	1	23	684	706	684	706	0.97
9	15	0.0001	0.01	17.1	6.7	1	23	712	734	712	734	0.97
10	15	2.9e-06	0.00027	22.0	7.9	1	23	740	762	740	762	0.98
11	15	1.1e-06	0.0001	23.3	7.7	1	23	768	790	768	790	0.98
12	15	0.00033	0.032	15.5	9.5	1	23	796	819	796	819	0.95
13	15	0.00028	0.027	15.7	0.5	1	23	825	847	825	847	0.97
14	15	0.00057	0.054	14.8	4.5	1	23	857	879	857	879	0.99
15	15	1.5e-05	0.0014	19.7	1.6	1	23	885	908	885	908	0.96

Sequence Information

Coding Sequence: ATGAATACAGAACATGCATCAGCAACTCCTGGTGAGTCGGCAACAAATCAGCAACAAAATGATTCcaatcagcagcaacaacaaacgcGTCATTCTCCTCAGCAACAAATCGCAGCACATTCACGACATCCGCAGCAACAATTGAACGAGCATACAACGCGTAATCCAGCCCAAAATCATTCTCAATCTCATCCCCAACAACAGCAAATAGTTCAATCTGCTATAAATATTGAACGATTACCAAATACAACAAGTGCAATTGTTGTAAGCAGTGATAATGGTGAGATAACTCATCAGCAGCATACTATTGACACCAATAATGTGAATCATAATATAAGTGGTATGCAACGGATTggacaaattgaaaatatcaaaattgaaGCAAATCCTACATCTGAGCATCTTCATCAGGAGGCAACGAATGCAGCATTAACAACAAACTCAACGCTATTACCAAATATATCAAATcttGGCAAATACTGGGTCGTTACAAATCTTTTTCAGGGACCCGGTCAAACTCCTTATAATATAGGTGTCCCATCGACCACGTCGGCAGTGCCTGCACTAACGGCTCCATTGTCAACACATGTTAACACAGCCCAGACAAAAGCAGCTTCTTCGTCCACAGCGAAAAATGTTGCTGGAAACGATTCTATGAATAACAATAGCAGTGGTGTAACAGCACTGCAAATACCACAACCAATGTTGACAAACGCAACAATTGCACAACAGCTACCAAATGGTACTATTATAACAACACAACGTCATCCTTCTGcagaacagcaacagcagcagcaaatgcaTGTTCACGATGATAACCGACAACATGTTgcacagcagcaacagcaacatgttAATgttcagcaacaacaacaacaacaacagcagcagcaacaaacacTTCAGGATGTAAAAGAGGAAAAACCATACATCTCCAATGGAAAGATCAATCAACAAATGATCATACAACATGTGACTGCATCGACTACTCCAACAACGTCATCCGGAAATGGCGCAACTACAATAACATTGGGTACACCGAAAGCAGACATCAAAGATCATGAAATGGGAAAACCACCTCCAGGCATAGAAATGTACAAAGTTAATATTGAGGATATATCCCAATTATTTACGTATCAtgaagtttttggtaaaattcaTGGTGAAGTAATGAACCATCAAATTACTTCAATTGCCCATCcaaatgcagccaccataacATCAGCTGGTAATTCCGCTGCTACAATATCTACAACTAGTACTACATCGGGCATAGCACCACCATCAACGACATCAAATTTGACAACAACAATTGCCAGTGGTACCACCACTGTGATGGCAACTGGCACCGGTACAGCACCTGGTGAACTGTTAATGCCCAAAATGGAAGGTGGCCTGACTGTTGATCAAACCACAACAATAACACTGGCTCCTGACGGCACCCCTATTGCAACTGGAAATCATGTTTGTGACATTTGTggcaaaatgtttcaatttcgCTATCAACTAATAGTACATAGGCGCTATCACAGTGAACGTAAACCATTTAATTGTCAAGTATGTGGTCAGGGTTTTACTACATCACAGGATCTAACACGTCACGGAAAAATTCATATTGGTGGTCCCATGTTTACGTGTATCATATGTTTTAATGTATTTGCTAATAATGCAAGCCTAGAGCGTCATATGAAGCGCCATTCGACGGACAAACCATTTGCATGCACCATTTGTCAGAAGACATTTGCGCGCAAAGAGCATTTGGATAATCATTTTAGATCGCATACAGGCGAGACGCCTTTCCGCTGCCAATATTGCGCCAAGACTTTCACACGAAAGGAACACATGGTTAATCATGTACGCAAGCATACTGGGGAGACACCGCATCGGTGCGATATCTGTAAAAAATCGTTTACGCGCAAGGAACATTATGTTAATCACTATATGTGGCACACTGGTCAAACACCTCATCAGTGCGAAGTTTGTGGTAAAAAGTACACCAGAAAGGAACATTTGGCTAATCACATGCGTTCTCACACCAATGATACACCTTTCCGTTGTGAGATTTGCGGCAAAAGCTTCAGTCGAAAGGAGCATTTTACCAATCACATCCTCTGGCACACAGGAGAAACTCCTCATCGTTGTGATTTCTGTTCGAAAACTTTTACACGCAAGGAACACTTGCTTAATCATGTCCGCCAACATACTGGTGAATCACCGCATCGTTGTACCTATTGTAAGAAAACTTTTACGCGTAAAGAGCATTTGACCAATCATATTCGCCTGCATACTGGCGATTCTCCACATAAGTGTGAATATTGTCAGAAGACATTTACGCGTAAGGAGCATCTTAATAATCATATGCGCCAACATTCGAGCGACAATCCACATTGTTGCAATGTTTGCAACAAACCTTTTACACGCAAAGAACATCTGATCAATCACATGTCACGATGCCATACAGGAGATCGTCCGTTTGCCTGTGAAACGTGCGGCAAGTCATTTCCATTGAAGGGAAATCTATTATTCCACCAGCGTAGTCACACAAAGGGACAAGATTGTGAACGTCCATTTCAATGCGAAAAGTGTCCTAAGAACTTCATTTGTAAAGGTCATTTGGTGTCGCACATGCGCTCCCATTCAGGAGAAAAACCACACGCTTGCACCTTGTGCAGCAAAGCATTTGTTGAGCGTGGAAATTTGAAGCGTCACATGAAAATGAATCATCCGGATGCAGTTATGCCGCCTCCCCCAGTTCCGCATCCACAAATTCCAGCGGGAATACTTACATCTATTAAGCAGGAAATAAACCCAATAATAAttCCTCATCAAACTCCAACAATGCATACAATACAGCAAATAACATCAAGTGCTGCCGCCGCCGGGGCTGCCAATACTATACAATTGACCCCAGGCCTGGTGCCATTGGTTACATCAACAATAACTTCGCATAACAgtcaaaagcaacaacagcagcaacagcaacaacaacaacaacaacagcagcaacaacaacaacaacagcagcaacaagcgcaacaacaacatcagcagcagcagcagcaacaacagcagcaacaacaagctcaacatcaacaacaactacaacaacagcaacaattgttGCAACTATCAATACAACAGGCAGCTCATCATCAACAACAGGAACAACATCgtcaacatcaacagcaacaacaacagcagcagcagcatcagcaacaacaagtacatcatcaacaacaacaagcgcaagccacacaacagcaacagcaagcCCATCCACAATCACAGCCGCCTCAAGTGCCGATCGCATTGATACAAGCCGATCCTAGCGCATTAGCGCGTGCAGCTATGCAATTACAACATATGCCAGCAAATGTTGAACAACATCCGGTGGTTTATTAA
Protein Sequence: MNTEHASATPGESATNQQQNDSNQQQQQTRHSPQQQIAAHSRHPQQQLNEHTTRNPAQNHSQSHPQQQQIVQSAINIERLPNTTSAIVVSSDNGEITHQQHTIDTNNVNHNISGMQRIGQIENIKIEANPTSEHLHQEATNAALTTNSTLLPNISNLGKYWVVTNLFQGPGQTPYNIGVPSTTSAVPALTAPLSTHVNTAQTKAASSSTAKNVAGNDSMNNNSSGVTALQIPQPMLTNATIAQQLPNGTIITTQRHPSAEQQQQQQMHVHDDNRQHVAQQQQQHVNVQQQQQQQQQQQQTLQDVKEEKPYISNGKINQQMIIQHVTASTTPTTSSGNGATTITLGTPKADIKDHEMGKPPPGIEMYKVNIEDISQLFTYHEVFGKIHGEVMNHQITSIAHPNAATITSAGNSAATISTTSTTSGIAPPSTTSNLTTTIASGTTTVMATGTGTAPGELLMPKMEGGLTVDQTTTITLAPDGTPIATGNHVCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQDCERPFQCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAVMPPPPVPHPQIPAGILTSIKQEINPIIIPHQTPTMHTIQQITSSAAAAGAANTIQLTPGLVPLVTSTITSHNSQKQQQQQQQQQQQQQQQQQQQQQQQAQQQHQQQQQQQQQQQQAQHQQQLQQQQQLLQLSIQQAAHHQQQEQHRQHQQQQQQQQQHQQQQVHHQQQQAQATQQQQQAHPQSQPPQVPIALIQADPSALARAAMQLQHMPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01181322;
90% Identity: iTF_01486493;
80% Identity: -