Pcor010593.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- lrrfip2
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000321.1:399902-401089[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-107 3.9e-103 346.1 24.0 1 299 31 319 31 320 0.94 2 2 0.22 3.1e+03 -1.6 4.2 135 158 354 377 324 394 0.46
Sequence Information
- Coding Sequence
- ATGGATACAAGCAGTAACGTGTTAGGAAGGCGTAGAATCAATTCGCGTGTTAATGCAGAGGATCAGGCGCTAGATCAGATTGCAAAAGAAGCAGAAGCACGTCTCGCAACTCGTAGACAGGCACGTGCAGAGGCACGAGAGGTACGCATTCGTGAGCTGGAGCGACAACAAAAGAAATTAGAACAAAATGCTGATCGTGTATTTGATATGCACTCTGGAGTCGGACTTGATTCCTTGTCGCGATCTCGCCTTGTTGCTGGTATGGGTGGTTCCCCGGTCACAAGAGCGAGTTCGATGTCATCGCGTCGAAGCAGCGAAGATTCGCTGGAGGAAGAAGGCCGCAGTCTGCGCGACATGAGACACGAACTGAAGGATGTAGAAGACCGTTTCCGAAAAGTAATGATCGCCAATGCGCAGTTAGATAATGAATGCGCTTCAAAAACTTATCAAATACAGATGTTGAAGGATAAGCTTGAGGAGGTTTGTGAGTCTTATGCGCAATTGCAGCGAGAGTTCAAAGATAAAACACGTGATTATAGTGCGCTTAAACGAAATCTCGATAAACTCAACGAAGAGCTGAAATTGGTTCAAGGACAGCTGGAGGAACGTGATATGCTTATCCAAGAACAAGGTCTTCTCATAGTCTCAGTCGAAAATGTCGACGGAACTGATGCAAAACGCGCTCTAGTCACTGTAGATAACGCGCAGTTATTGGGTTCTGTACAGGGTTCGCTAGATGTACGCCTCAAAAAGTTCAGTGAAGAAAAGCAGCAGCTCTTAGTCGAAGTGCAGAACTTGCAAGAGCAATTGAAAGCTTATAAAACATGTGGAGGGAAATCAAACTCGATGAATGGACCCGCTGGCATAAATGATGATGATTACGATGCGCAAAGAGAGGCCAATAAAATCATATCGGACTACAAATACAAATTGCAGAAGGCTGAGCAGGAAGTTGCTAGTCTTCAGGCAAGTTTAGCGCGTTCTGAAACGCAAGTAATACGTTATAAAAGCACCTCGGAAGCAGCAGAAAAAGCAGAAGCCGAGCTCAAAATCGAACGAAGAAAGTTACAACGTGAAAATCGTGAGGCTATGGAACGTTTAGAGGAATTGGAAACATCTAACAACCATCTGCTGAAACGTTTGGACAAATTGAAGAATGCAAAAAGTGCGTTGCTTAAGGAGCTCTGA
- Protein Sequence
- MDTSSNVLGRRRINSRVNAEDQALDQIAKEAEARLATRRQARAEAREVRIRELERQQKKLEQNADRVFDMHSGVGLDSLSRSRLVAGMGGSPVTRASSMSSRRSSEDSLEEEGRSLRDMRHELKDVEDRFRKVMIANAQLDNECASKTYQIQMLKDKLEEVCESYAQLQREFKDKTRDYSALKRNLDKLNEELKLVQGQLEERDMLIQEQGLLIVSVENVDGTDAKRALVTVDNAQLLGSVQGSLDVRLKKFSEEKQQLLVEVQNLQEQLKAYKTCGGKSNSMNGPAGINDDDYDAQREANKIISDYKYKLQKAEQEVASLQASLARSETQVIRYKSTSEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00624743;
- 90% Identity
- iTF_01181154;
- 80% Identity
- -