Ptre016718.1
Basic Information
- Insect
- Pheosia tremula
- Gene Symbol
- ZFX
- Assembly
- GCA_905333125.1
- Location
- HG995415.1:9056688-9059490[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.11 6.7 7.5 3.4 1 23 27 49 27 49 0.94 2 19 0.00012 0.0073 16.8 2.2 2 23 56 78 55 78 0.92 3 19 2.4e-06 0.00015 22.2 0.9 1 23 84 106 84 106 0.99 4 19 2.5e-06 0.00015 22.1 4.3 1 23 112 134 112 134 0.98 5 19 8e-05 0.0048 17.4 0.3 1 23 140 162 140 162 0.98 6 19 3.4e-06 0.0002 21.7 2.6 1 23 168 190 168 190 0.97 7 19 0.00041 0.025 15.2 5.2 1 23 196 219 196 219 0.96 8 19 0.033 2 9.2 1.1 2 23 282 302 282 302 0.97 9 19 6.1e-06 0.00036 20.9 1.0 1 23 307 330 307 330 0.96 10 19 6.8e-08 4e-06 27.1 1.9 1 23 336 358 336 358 0.98 11 19 2.1e-05 0.0013 19.2 0.3 1 23 364 386 364 386 0.98 12 19 6.7e-05 0.004 17.7 0.1 2 23 392 413 391 413 0.96 13 19 0.5 30 5.5 2.2 1 23 475 496 475 496 0.94 14 19 0.0014 0.086 13.5 0.5 2 23 612 634 612 634 0.96 15 19 0.00029 0.017 15.6 0.1 1 19 640 658 640 662 0.96 16 19 9.3e-06 0.00056 20.4 2.1 1 23 668 690 668 690 0.98 17 19 0.00086 0.051 14.2 6.6 2 23 697 718 696 718 0.97 18 19 0.00014 0.0086 16.6 3.1 1 23 724 746 724 746 0.98 19 19 9.2e-05 0.0055 17.2 3.2 1 23 751 774 751 774 0.97
Sequence Information
- Coding Sequence
- ATGAGGAAAGGGCGAATGGATGATGAAACTAGGCAGGAGCTAAGCGAGGTCCAAACAAAGGTTAATGGAAAAGTCTACTACACTTGTAAGATATGTGGAAAGAATTTGAGCTCGACGCACACATACGTGTTCCATAAGCGCATACACACAGGGGAGCGGCCGTGCGTGTGTCACATATGCGGCAAACAATTCCGGGTAGCCAACGGCCTTCAGCGACATTTAACCGAGACCCATGAACGAATAAAGCGTTACACTTGCATGTTGTGTCCGAAAACCTTCGCGAATACACAGAACTTGAAGCAGCACTTGCGAATTCACACCGGCGAGCGACCTTTCGTTTGCACACACTGCGGCAAGCGGTTCCGGCAGCGCGGGTCTCTGCATGTGCATCTGAAGGTTCACACGGAGCAGTTCCCTTACCAGTGCGCGGATTGCGGGGAGAAGTTCCGATTACGCGCTGGTTTAGTCCGACATAAACTGAAGCATACTGGTGAAAGGCCCCACGTTTGTCTACTCTGCGGCAAGACGTTCAGACAGAAATATGAACTGAACAACCATAGATTAATGCATTCTGATAGCAAGCCGTTCGCGTGCTGTATCTGTGGAGCGACATTCAAGCAACGCAGGACTCTGAGGCACCATACTAAGAGGGTGCATGAAAATGATGCGAGTCGTGAGGTGACGCACCCGCTAGTGTACCACCCTGGTCCACTGTACATAGAGGAGCATGAAATCAAAATCGAAGTGGACGAAGACACCGATACCTCAAACTTCGTTAAAATCATCGAACATATTGAAAAACCTACTATAATCACTGTAGGTGAGGATGGGAAGAGATACGGGAGCTGTAAAGTGTGTAATAAGACTGTTAGGCTAACATCTTGGAGACGACACGCGCGGAGCCATCAGGGGAACCGATACAGCTGCCACACCTGCGGGCTGGGCTTCAACGACAACGGAAACCTGTCTAGACACAGAAGAGCTTTGCACCCGAAACAACGCCCCTATTCCTGTCCCGTATGCAACAAAAGCTTCTCTAGAAACAGCCATTTGGAAGACCACGTGAAATCTCATTCGGAGAGCAGAGAATTCGTTTGTGATTTGTGCGGTAAAGCTTCGAAGTCGAGTGCGGCGTTGAGGATGCATCGGAAGACGCACGAGGCGCGCCGGCTGCGGTGCGTGGAGTGCGGGGCGCGGTTCAAGAGGCGGGCGGAGTTGAGAGCCCACGTGACCGTGCATACTGGGGAGAAGGCGCATTTATTCGAGGACATAGCCAACATAGTGGTCGCCCTGGCCCCGCCGCAGTACGGCGCGGCGGCCGGCAGCCCCGCGCAGCGCACGCGCGACTGCCAGTTCTGCGCCGCGCAGCTCGCCGACACCTCCTACAAGGAGCACTTGGTCACCGCGCACGCCGACATGCTGTTCCACTGCGAGGAGTGCGATAAGTACATCGACAGAAAAGACTTCATGCTGCACATGTCGCTGCACGCTGTACAATACTCTACAGACAGCGATAGAACTGACATAAAGAGGTGTAGGAAAGTTAAAAAGAAGGCACAAGATGAGAGCACTGACAGCGTCAGCGATGGAGACAAAACCTTTCCACAAAAACCAGAAGACCGTCCGGAGAACGAGTTCTCGGACCACAGCGACACCGAGTACGGTTTCGGACCACTACCCGAATCCGTTTTCGAAGCGATAGAAGACTCGCAGGACAGCCAGCCGCCCGATGAGGACCATGTCCATAATGAAGCTGAAAACTGTGACACTAACAGTCCACCGCTAGTGGAGAACACAGAAAAAGTTGTAATTAAAAGTCACAAGAAGACCAGAACGTGTCCAATTTGTTCCAAAGTCTACACAGCGTCGTCTAGCTACTTCTATCATCTGAAGTACTCTCACAATACAAACAAAGACTATGAATGTGATGTGTGTGGTAGAAAATTCGGGACGAAAGCCAGTTTGGCGCAGCACGCGCCGCTCCACACAGGGGAGTGTCAGTTCGAGTGCAAAGAGTGCAAGAAACGGTTTCGATCAAAAGCGAGCCTATACATCCATGAGCAGACCCACAATGGTATAAAAACATGGTCGTGTAATCAATGTCACAAGTCGTTCAGATGGCGGACGCATTTACTGCGACATATGAAGCGGCATTCGGCTGAAAAGGTTCACGTTTGTTCGGTCTGCGGCCGCGGGTTCAGCATCAGGTGCGACCTGTTGAGACACACGCGAACGCATAACGCGGGCACCTTCACGTGCGAGAAGTGCGGACACAAGTTCGCTCAGCTGAGGTATCTCAAAGTGCACATGGACAAGAAACATTTGGAGGCGGAGAAGGAATCTCATTGCGTGTAA
- Protein Sequence
- MRKGRMDDETRQELSEVQTKVNGKVYYTCKICGKNLSSTHTYVFHKRIHTGERPCVCHICGKQFRVANGLQRHLTETHERIKRYTCMLCPKTFANTQNLKQHLRIHTGERPFVCTHCGKRFRQRGSLHVHLKVHTEQFPYQCADCGEKFRLRAGLVRHKLKHTGERPHVCLLCGKTFRQKYELNNHRLMHSDSKPFACCICGATFKQRRTLRHHTKRVHENDASREVTHPLVYHPGPLYIEEHEIKIEVDEDTDTSNFVKIIEHIEKPTIITVGEDGKRYGSCKVCNKTVRLTSWRRHARSHQGNRYSCHTCGLGFNDNGNLSRHRRALHPKQRPYSCPVCNKSFSRNSHLEDHVKSHSESREFVCDLCGKASKSSAALRMHRKTHEARRLRCVECGARFKRRAELRAHVTVHTGEKAHLFEDIANIVVALAPPQYGAAAGSPAQRTRDCQFCAAQLADTSYKEHLVTAHADMLFHCEECDKYIDRKDFMLHMSLHAVQYSTDSDRTDIKRCRKVKKKAQDESTDSVSDGDKTFPQKPEDRPENEFSDHSDTEYGFGPLPESVFEAIEDSQDSQPPDEDHVHNEAENCDTNSPPLVENTEKVVIKSHKKTRTCPICSKVYTASSSYFYHLKYSHNTNKDYECDVCGRKFGTKASLAQHAPLHTGECQFECKECKKRFRSKASLYIHEQTHNGIKTWSCNQCHKSFRWRTHLLRHMKRHSAEKVHVCSVCGRGFSIRCDLLRHTRTHNAGTFTCEKCGHKFAQLRYLKVHMDKKHLEAEKESHCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01073788;
- 90% Identity
- iTF_01179660;
- 80% Identity
- -