Psol003550.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- Hr39
- Assembly
- GCA_009761765.1
- Location
- chr2:32458218-32466316[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 1.2e+04 -6.4 11.4 76 160 99 196 58 256 0.58 2 4 1 1.2e+04 -7.3 11.0 45 159 180 295 154 314 0.52 3 4 1.3e-09 1.5e-05 24.0 0.0 1 56 365 416 365 437 0.80 4 4 2e-68 2.3e-64 217.7 0.0 200 393 446 634 410 636 0.92
Sequence Information
- Coding Sequence
- ATGTCTTCGATTTGGACTCGCGGAGCTCATAGCGTCGTGTCCTCGGGACCGGTGACGGTTACGTCGATCAATGTGGAGGATATTCCGACGACCAACGAGCAAAATATTAATGCTCTGAAAGGTGTCAGCATGAGAAATAAGAAATCCAAATCTGATGAAGTTCCTAATGAAAGAATTGAAAGACCGATGTCATGGGAGGGTGAATTATCGGATTCGGAAATGAAACAAGAAAATGAAGACGGGAATACGTCGATCAATAATAGCGAACATGATTCGAGTCACTCGAGAATGGAAAACGTGGAAAATTCCGATGATGGAAAACCAGAGCTGTTGAAGTTTACGAGTGATGTTATGGTCGATCAAATGGCGGGAAACGTTAAAGTAAGCAAAGCAACGTCGCAGTCGGAAATACCATTATTGGTGGACAAATTACTAGGTAGCTGCTACAGTCCGGTGCTCCAGCATAGATCCGCTAAGAGTCAAATCCCTCCGACCGCTAGCCCGGACTCTGCCATACATAGTTGCTACTCGCCGACGCAATCGCCGGTTACTTCTAGACATCTACCGTCTTCCGGATTCTCTTCGCCTTTCACGCCGTCGTTGTCGCGTAATAATAGCGACGCATCGCAATACGGAGGATCGCAGCATAGCTCGTGTTACAGCCAAAGCTACTCATCGGTTTCCGTTTCTCCTACGCAATTCTCACCGACGCATTCACCCATTCAAGGAAGGCACGGGTATAGAACGGCTTCGGATTTTTCATCGCATAATGATAGTAATGTCTACGAAGACCGCGTGCCGCCGTTTACTACTGAGATGGGACATCATTCCCCTAATTTAAGCACCTCTTCCGGTATTTCAAGGCAGCAGTTGATAAATAGCCCGTGCCCAATTTGCGGAGATAAAATCTCCGGCTTTCATTATGGTATTTTTTCGTGCGAGAGTTGCAAAGGATTCTTCAAACGAACTGTACAGAATCACAAGAATTACGTATGCTTACGCGGCTCCTCGTGTTTAGTCACCATAGCCACTAGAAAAAAATGTCCGGCTTGTAGGTTCGATAAGTGTTTAAATATGGGCATGAAATTAGAAGCGATCAGAGTGGACCGAACACGAGGTGGTAGAAGTACCTATCCGTTTTCCTATACGTTGCCAGCCAGTATTACGCAAATGCAGAATTCCAACGATTCGACGGCGAACGCGGTTAAACAAGAGAATCAGCCCGATACATCACCTCCGTCGCCTCACATGTCTAATAGACTTATACCGCCGTTGCTGCAAGAAATTATGGAAGTCGAACATTTATGGCAGTATAATGAAGGAGAAACGCCTAATATACGCGCCAACAGTAACAATCCAGATTTTCTTTCTAACTTGTGTAATATCGCCGATCATCGGTTGTATAAAATTGTTAAATGGTGCAAATCACTGCCCTTATTTAAGAATATTTCTATCGACGATCAAATTTCGTTGCTGATAAACGCGTGGTGCGAATTGTTATTATTTAGTTGTTGTTATCGCTCTGTCGGAAGCCCTGGTGAAATTAGAGTTAGTTTGGGAAAGTCGATTACGCTGAGTCAAGCCAGAGAACTAGGGTTGGCTCCGTGTATCGAAAGAATGTTGAACTTTACGGAGCATTTGCGTAGACTTAGAGTAGATCGGTACGAATATGTTGCCATGAAGGTTATCGTTCTTCTTTCCTCAGATTCCAGCGATCTTAGAGAACCGGAGAAGGCTAGGGCGTCGCAAGAAAAAGCATTGCAAGCTTTACAAGAATACACTATAGCTCACTATCCGGATATGCCTTCTAAATTTGGAGAATTATTGTTGAGAATTCCTGATTTACAGAGAACTTGCCAGGTTGGCAAAGAAATGCTCTCGATCAAACACAAGGAAGGCGAAGGTCCA
- Protein Sequence
- MSSIWTRGAHSVVSSGPVTVTSINVEDIPTTNEQNINALKGVSMRNKKSKSDEVPNERIERPMSWEGELSDSEMKQENEDGNTSINNSEHDSSHSRMENVENSDDGKPELLKFTSDVMVDQMAGNVKVSKATSQSEIPLLVDKLLGSCYSPVLQHRSAKSQIPPTASPDSAIHSCYSPTQSPVTSRHLPSSGFSSPFTPSLSRNNSDASQYGGSQHSSCYSQSYSSVSVSPTQFSPTHSPIQGRHGYRTASDFSSHNDSNVYEDRVPPFTTEMGHHSPNLSTSSGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNHKNYVCLRGSSCLVTIATRKKCPACRFDKCLNMGMKLEAIRVDRTRGGRSTYPFSYTLPASITQMQNSNDSTANAVKQENQPDTSPPSPHMSNRLIPPLLQEIMEVEHLWQYNEGETPNIRANSNNPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQISLLINAWCELLLFSCCYRSVGSPGEIRVSLGKSITLSQARELGLAPCIERMLNFTEHLRRLRVDRYEYVAMKVIVLLSSDSSDLREPEKARASQEKALQALQEYTIAHYPDMPSKFGELLLRIPDLQRTCQVGKEMLSIKHKEGEGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00005508;
- 90% Identity
- iTF_01177803;
- 80% Identity
- iTF_01177803;