Pobe014214.1
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- Mbd2
- Assembly
- GCA_949628195.1
- Location
- OX451215.1:208586112-208588185[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-25 4.4e-21 75.9 0.0 1 73 9 76 9 80 0.94 2 2 8.2e-06 0.078 14.2 0.0 27 75 195 252 182 254 0.87
Sequence Information
- Coding Sequence
- atGCAAATGAACTCGAATATTTCAATTGAACGTAAAAAAGTAGACTGCAATGCTCTGCCTAAAGGATGGCAAAGAGAGGAAGTTTTACGAAAGTCTGGAATATCAGCGGGGAAAGTTGATGTATATTATTACagTCCTACTGGGAAACGTATAGATAGCAAACCACAATTGGCACGGCAATTAGGAGATGCTATAGATATAAGCagttttgattttcaaaaaggCAAGTTCATACAACATCTGCCATCACCTTCTATATCACTTTACCGCTGCGCACCTGGTAAAACATCAGCAGTGGGCAGTGGTGCAAGTAGTGCAGTAGGTGGTGGTAGTAATGCTGGCGGTGCTACTTCATTGCCATCATTGGGTGATGGTATAACTATAATACCATCACATCATCTATCTGTGGGACAAAATTTAAAGCGTAAACATAGAATGGGATCTCAAACAGCAGTTTTTAATTTACCCTCGTTGTCATCCACTTCAATTTCAAGTCATCATAATCTTTTAAGTTCTTGCACAGCGATGACGGCGACAACATCAACTAATTTGCCACTTAAGCAACAACAATTAGAATTCAGTCGCGCTATGCGAACAGATGTCTCTCTGGTGCCACCAATACGACAGACTGCCTCCATATTTAAGCAACCGGTTACTGTAATACGAAATCACGAAAGCAGCAAGACAAAAAATGACACAAAACAAGGAGCACAAGATAAACCAAAACAGTTATTTTGGGAAAAACGTCTAGAGCGTATGAGAGCTTGCCATGCAACCGGTGAGCAATTTGATGACATTGTATTGCCCAAAAGTCTAAAACCATTAGGACCCAATGTCCACGAACAGACAGTCATGCAATCCCTAGCAACAGCTTTACATGTACTAAATACTCCCGTTACTGGACAAACAGCTTCCAAGACTGAATTTCAGAAAAACTCTACTGCCTTCATCAATCCTGACCAACCGCTGATGCAGGGTATTCTTATATCAGAGGATGATATACGAAGACAAGAAGATCGTGTTAATTTCGCACGAAGAAAATTACAAGAAGCATTAAAGGCTTAA
- Protein Sequence
- MQMNSNISIERKKVDCNALPKGWQREEVLRKSGISAGKVDVYYYSPTGKRIDSKPQLARQLGDAIDISSFDFQKGKFIQHLPSPSISLYRCAPGKTSAVGSGASSAVGGGSNAGGATSLPSLGDGITIIPSHHLSVGQNLKRKHRMGSQTAVFNLPSLSSTSISSHHNLLSSCTAMTATTSTNLPLKQQQLEFSRAMRTDVSLVPPIRQTASIFKQPVTVIRNHESSKTKNDTKQGAQDKPKQLFWEKRLERMRACHATGEQFDDIVLPKSLKPLGPNVHEQTVMQSLATALHVLNTPVTGQTASKTEFQKNSTAFINPDQPLMQGILISEDDIRRQEDRVNFARRKLQEALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00331517;
- 90% Identity
- -
- 80% Identity
- -