Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3 5.7e+04 -5.2 5.1 9 18 25 36 24 37 0.61

2 8 0.019 3.6e+02 2.9 8.0 9 18 43 52 41 53 0.92

3 8 3 5.7e+04 -4.1 0.2 9 11 59 61 58 61 0.75

4 8 3 5.7e+04 -4.8 1.3 16 18 80 83 79 84 0.44

5 8 2.6e-09 4.8e-05 24.9 11.4 1 16 89 104 89 109 0.89

6 8 0.46 8.7e+03 -1.5 0.5 5 10 107 112 106 112 0.91

7 8 6.5e-05 1.2 10.8 11.2 1 19 119 142 119 142 0.87

8 8 0.18 3.5e+03 -0.2 0.3 7 12 157 162 151 162 0.70

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3	5.7e+04	-5.2	5.1	9	18	25	36	24	37	0.61
2	8	0.019	3.6e+02	2.9	8.0	9	18	43	52	41	53	0.92
3	8	3	5.7e+04	-4.1	0.2	9	11	59	61	58	61	0.75
4	8	3	5.7e+04	-4.8	1.3	16	18	80	83	79	84	0.44
5	8	2.6e-09	4.8e-05	24.9	11.4	1	16	89	104	89	109	0.89
6	8	0.46	8.7e+03	-1.5	0.5	5	10	107	112	106	112	0.91
7	8	6.5e-05	1.2	10.8	11.2	1	19	119	142	119	142	0.87
8	8	0.18	3.5e+03	-0.2	0.3	7	12	157	162	151	162	0.70

Coding Sequence: TTCGAAGAGCTGCATTGCGAGTGCGGCGCCGAGGTGCTCCTGCCGCCGGTGCGCTGCGGCAGCCGGCCACCGGTGTGCCATGCGCCGTGCCGCCGCGAGCGGCCCTGCAGCCACCCGCCGCACCACGCCTGCCACACCGACGACTGCCCGCCCTGTGTCGTCCTCACCACCAAAATGTGCCACGGAAAACATGAGGAGCGTAAAACAATACCGTGTTCTCAAGAAGAGTTCTCCTGCGGACTTCCGTGCGGTAAGCCTCTTCCATGCGGGAAACACACTTGCACGAAGACATGCCATAAAGGACCATGCGACACTGAAAAATGCAAGCAGGCGTGTACCGAGAAACGCGCAGGGTGCGGGCACACGTGCGCGGCGCCGTGCCACGTGGACAACGGGGGTGCGTGCCCCAGCAGCTCGCCGTGCAGGCGGACCGTGCGCGCGACATGCGCATGCGGCCGCCGCACTGCCGACCGCACCTGCCACGACAACGCGCGCGACTACGCAAAAATCATGAGTACGCTAGCGGCAACGAAGATGCAAGAAGAAGGTACGGTTGACCTATCGGACGTGCAACGACCCGGTGCTATGTTAAAGACGTTGGAGTGCGACGACGAGTGCCGCATGGAGGCACGCAGCCGGCAGCTCGCGCTAGCGCTGCAGATTCGCAATCCGGACGTGTCCGCGAAGCTCGCGCCGCGGTACAGCGAGCACGTACGCGCGACAGCCGCTCGGGAGCCCGCCTTCGCGCGCCAGGTGCACGACTGCCTCTCCGAGCTAGTACAGCGGGCCAAGAAGTCGAAGCAGAAGACTCGCGCGCACTCGTTCCCTTCGATGAACCGACAAAAGCGTCAGTTCATACACGAACTGTGCGAACACTTTGGGTGCGAGAGCGTAGCGTACGACGCGGAGCCGAATAGGAACGTAGTAGCCACAGCGGACAGAGAAAAGTCATGGCTGCCAGCGATGAGTGTTCTGGAGGTTTTGGCGCGGGAGGCGGGTAAGCGGCGTGTACCCGGGCCGGTGCTACGCACCCCCGCCACTGCTGCTAGCATGGCGCCCGCTGCCACACCTACCACGTCCACCAGGTaa
Protein Sequence: FEELHCECGAEVLLPPVRCGSRPPVCHAPCRRERPCSHPPHHACHTDDCPPCVVLTTKMCHGKHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCTKTCHKGPCDTEKCKQACTEKRAGCGHTCAAPCHVDNGGACPSSSPCRRTVRATCACGRRTADRTCHDNARDYAKIMSTLAATKMQEEGTVDLSDVQRPGAMLKTLECDDECRMEARSRQLALALQIRNPDVSAKLAPRYSEHVRATAAREPAFARQVHDCLSELVQRAKKSKQKTRAHSFPSMNRQKRQFIHELCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSVLEVLAREAGKRRVPGPVLRTPATAASMAPAATPTTSTR

Sequence clustering based on sequence similarity using MMseqs2