Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.8 3.3e+04 -3.4 0.8 15 18 14 18 13 19 0.54

2 5 2.1e-09 3.8e-05 25.1 11.5 1 16 24 39 24 44 0.89

3 5 0.41 7.2e+03 -1.3 0.6 5 10 42 47 42 47 0.91

4 5 0.0009 16 7.1 9.7 1 18 54 76 54 77 0.80

5 5 0.15 2.7e+03 0.0 0.2 8 12 93 97 92 97 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.8	3.3e+04	-3.4	0.8	15	18	14	18	13	19	0.54
2	5	2.1e-09	3.8e-05	25.1	11.5	1	16	24	39	24	44	0.89
3	5	0.41	7.2e+03	-1.3	0.6	5	10	42	47	42	47	0.91
4	5	0.0009	16	7.1	9.7	1	18	54	76	54	77	0.80
5	5	0.15	2.7e+03	0.0	0.2	8	12	93	97	92	97	0.81

Coding Sequence: GAGCGGAAGACAATACCGTGCAGCCAGGAGGAGTTCTCGTGCGGTCTGCCGTGCGGCAAGCCGCTACCCTGCGGCAAGCACACCTGCACCAAGACCTGCCACAAGGGACCCTGCGATACTGACaaATGCAAGCAGGCGTGCACGGAGAAGCGGGCGCGGTGCGGGCACGCGTGCGCGGCGCCGTGCCACGTGGACAACGGCGGCGTGTGCCCCAGCGCCGCGCCCTGCCGCCGCCTCGTGCGCGCCCTCTGCGCCTgcgcgcgccgcgccgccgacAGGCCCTGCCACGAGAACGCCAGGGACTACGCCAAAATGATGAGTGCGCTCGCCGCAACCAAAATGCAAGAAGGAGGATCCGTGGATCTATCTGAGGTGCATCGCCCCGGAGCTATGCTTAAAACGCTGGAGTGCGACGACGAATGCCGTATGGAGGCGCGCAGCCGGCAGCTGGCGCTGGCGCTGCAGATCCGCAACCCCGACGTGTCGGCGAAACTGGCGCCGCGCTACAGCGACCACGTGCGCGCCACCGCCGTGCGCGAGCCGGCATTCGCACAGAACGTGCACGACACGCTCACTGAGCTCGTGCAGCGCGCCAAGAAGtcaAAGCAGAAGACGCGCGCGCATTCGTTCCCGTCAATGAACCGTCAGAAGCGTCAGTTCATCCACGAGCTGTGCGAGCACTTCGGCTGCGAGAGTGTCGCCTACGACGCGGAGCCCAACCGCAATGTCGTCGCCACCGCCGACAGGGAGAAGTCATGGTTGCCAGCGATGAGTGTGCTGGAGGTGCTGGCGCGGGAGGCGGGCAAGCGGCGTGTGCCGGGACCCGTGCTGCGCGCGCCCGCCACGCACGCCACACACGCCACACATGCCACGACCACC
Protein Sequence: ERKTIPCSQEEFSCGLPCGKPLPCGKHTCTKTCHKGPCDTDKCKQACTEKRARCGHACAAPCHVDNGGVCPSAAPCRRLVRALCACARRAADRPCHENARDYAKMMSALAATKMQEGGSVDLSEVHRPGAMLKTLECDDECRMEARSRQLALALQIRNPDVSAKLAPRYSDHVRATAVREPAFAQNVHDTLTELVQRAKKSKQKTRAHSFPSMNRQKRQFIHELCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSVLEVLAREAGKRRVPGPVLRAPATHATHATHATTT

Sequence clustering based on sequence similarity using MMseqs2