Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.4 2.4e+04 -3.1 0.7 6 10 26 30 26 31 0.69

2 9 0.41 6.9e+03 -1.3 1.3 7 11 33 37 33 38 0.84

3 9 6.2e-05 1.1 10.9 8.0 10 18 44 52 42 53 0.93

4 9 0.95 1.6e+04 -2.5 0.1 8 11 58 61 57 63 0.75

5 9 2 3.4e+04 -3.6 0.8 15 18 79 83 78 84 0.54

6 9 2.3e-09 4e-05 25.0 11.5 1 16 89 104 89 109 0.89

7 9 0.44 7.5e+03 -1.5 0.6 5 10 107 112 107 112 0.91

8 9 0.00023 3.9 9.1 9.9 1 19 119 142 119 142 0.88

9 9 0.17 2.8e+03 -0.1 0.2 8 12 158 162 157 162 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.4	2.4e+04	-3.1	0.7	6	10	26	30	26	31	0.69
2	9	0.41	6.9e+03	-1.3	1.3	7	11	33	37	33	38	0.84
3	9	6.2e-05	1.1	10.9	8.0	10	18	44	52	42	53	0.93
4	9	0.95	1.6e+04	-2.5	0.1	8	11	58	61	57	63	0.75
5	9	2	3.4e+04	-3.6	0.8	15	18	79	83	78	84	0.54
6	9	2.3e-09	4e-05	25.0	11.5	1	16	89	104	89	109	0.89
7	9	0.44	7.5e+03	-1.5	0.6	5	10	107	112	107	112	0.91
8	9	0.00023	3.9	9.1	9.9	1	19	119	142	119	142	0.88
9	9	0.17	2.8e+03	-0.1	0.2	8	12	158	162	157	162	0.81

Coding Sequence: TTCGAAGAACTCCACTGTGAGTGTGGCACGGAAGTTTTGTTACCACCAATCCGATGTGGTACCCGGCCGCCGGTGTGCAGTGCCCCCTGCCGCCGTGAGAGGCCCTGCCACCATCCGCCGCACCACTCCTGTCACACGGGTGACTGCCCGCCGTGCGTGGTGCTCACCACCAAAATGTGCCATGGACAGCATGAGGAGCGGAAGACAATACCGTGTAGTCAAGAAGAGTTTTCGTGCGGGCTGCCGTGTGGCAAGCCCCTGCCGTGCGGCAAACACACGTGTACCAAGACTTGTCACAAAGGGCCCTGCGATACTGACAAATGTAAGCAGGCGTGCACGGAGAAGCGGCCGAGCTGCGGGCACGCGTGCGCGGCGCCGTGCCACGTGGACAACGGCGGCGCGTGCCCCAGCGCCGCGCCCTGCCGCCGCCTCGTGCGTGCCACCTGCGCGTGCGCGCGACGCTCCACCGACCGACCGTGCCACGAGAACGCAAGAGATTACGCCAAaatgaTGAGTGCGCTGGCAGCGACCAAAATGCAAGAGGGAGGCTCCGTGGACTTGTCTGAAGTGCAGCGGCCTGGCGCCATGTTGAAGACTTTGGAGTGCGACGACGAATGCCGCATGGAGGCGCGCAGCCGGCagctggcgctggcgctgcaGATCCGCAACCCGGACGTGTCCGCCAAGCTGGCGCCGCGCTACAGCGAGCACGTGCGTGCTACCGCCGTGCGCGAGCCCGCCTTCGCGCAGAACGTGCACGACTGCCTCACCGAGCTCGTGCAGCGTGCCAAGAAGTCGAAGCAGAAAACGCGCGCGCATTCGTTCCCGTCCATGAACCGACAGAAGCGCCAGTTTATTCACGAGCTGTGCGAACACTTCGGCTGCGAGAGCGTCGCCTACGACGCCGAGCCCAACCGGAACGTCGTCGCCACCGCCGACAGGGAGAAG
Protein Sequence: FEELHCECGTEVLLPPIRCGTRPPVCSAPCRRERPCHHPPHHSCHTGDCPPCVVLTTKMCHGQHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCTKTCHKGPCDTDKCKQACTEKRPSCGHACAAPCHVDNGGACPSAAPCRRLVRATCACARRSTDRPCHENARDYAKMMSALAATKMQEGGSVDLSEVQRPGAMLKTLECDDECRMEARSRQLALALQIRNPDVSAKLAPRYSEHVRATAVREPAFAQNVHDCLTELVQRAKKSKQKTRAHSFPSMNRQKRQFIHELCEHFGCESVAYDAEPNRNVVATADREK

Sequence clustering based on sequence similarity using MMseqs2