Pant000883.1
Basic Information
- Insect
- Pharmacophagus antenor
- Gene Symbol
- -
- Assembly
- GCA_018245475.1
- Location
- DWQX01000110.1:29236-32673[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-11 6.3e-08 33.8 0.0 4 35 100 132 97 137 0.92
Sequence Information
- Coding Sequence
- ATGCGCCGAATGTACGCCAGCTTATGTTTACTTTCGGGCCGCTTGCGAAGGGCGAGCGCGCGGCTCGAGCGGCTCGCGGCGCGCTCAGCGGCGACTCTTTGTGTCCAACGCAACGCGCTGGCGAAGCTCTACAGAAGTTTTAATTGTGGCAGCAGACAAAGGCGGCGCGTTAATACGGCAGTAACTACAGCTAAATTGCTCGAAAATTCACACGCTTGGCTTGGAGCATCGACATCTTCGATTGCAGAATTCCACGGTCATACTCTGAAGTTGAAAGCACCAACCTGGACGCAGAGTCAACTACAAGAAGCAATTCAAGCCGTGGTCACCCAGAAAATGCGGTTCACACAAGCTGCCACTCGTTACGGAATACCTAAAGGAACATTATACGACAACATTTTGGGCAAATCCAAACGTATGGCAGTATTAGACGAAGCAGGACTGTTGCCTAATGAAGAAAGAGCAGTTCTAGACTTTTGCTGTGAAACCAGTGTCTCACCTTACAACAGGAGAACTAAAAAGTCATTAACCGACGTACTGACGTTCGTTGAGAAATTAAGACGAAGCAGAGACCCTGGTTTCGCATTTATCGGTCTGACTGGTTTTAGGTGGTGGTGGGCGTTCTGCAAGAAACATTCCATAGTCTCTTTATATTTCGAAAGttcaattaagataaaaaattcaaaggTTAAAGCTGAAGCTAATACTGATGACGAATCTTAA
- Protein Sequence
- MRRMYASLCLLSGRLRRASARLERLAARSAATLCVQRNALAKLYRSFNCGSRQRRRVNTAVTTAKLLENSHAWLGASTSSIAEFHGHTLKLKAPTWTQSQLQEAIQAVVTQKMRFTQAATRYGIPKGTLYDNILGKSKRMAVLDEAGLLPNEERAVLDFCCETSVSPYNRRTKKSLTDVLTFVEKLRRSRDPGFAFIGLTGFRWWWAFCKKHSIVSLYFESSIKIKNSKVKAEANTDDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00782572;
- 90% Identity
- iTF_01494247;
- 80% Identity
- -