Ptie074812.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- L_1
- Assembly
- GCA_963931995.1
- Location
- OZ008371.1:78407991-78416469[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.8e-06 0.0019 20.8 1.7 1 23 182 204 182 204 0.98 2 18 0.74 1.6e+02 5.3 5.8 1 23 210 232 210 232 0.98 3 18 3.8e-07 8.3e-05 25.0 3.1 1 23 238 260 238 260 0.99 4 18 1.8e-05 0.0038 19.8 0.3 1 23 266 288 266 288 0.98 5 18 0.98 2.1e+02 4.9 1.1 2 23 353 376 352 376 0.91 6 18 0.0017 0.36 13.6 0.3 2 23 403 425 402 425 0.96 7 18 0.16 34 7.4 0.6 1 23 525 547 525 547 0.95 8 18 0.00037 0.079 15.7 1.1 2 23 555 576 554 576 0.96 9 18 0.0022 0.47 13.2 0.6 1 23 584 608 584 608 0.93 10 18 0.19 42 7.1 0.0 1 19 613 631 613 633 0.94 11 18 0.0023 0.5 13.2 2.9 1 23 705 727 705 728 0.96 12 18 5 1.1e+03 2.7 0.9 1 23 893 917 893 917 0.89 13 18 0.0013 0.29 13.9 4.8 2 23 926 948 925 948 0.97 14 18 0.19 42 7.1 0.1 1 23 954 976 954 976 0.92 15 18 0.49 1.1e+02 5.8 0.7 2 23 984 1005 984 1005 0.94 16 18 0.26 57 6.7 0.5 2 23 1096 1117 1096 1117 0.94 17 18 0.0021 0.46 13.3 0.3 1 23 1127 1149 1127 1149 0.96 18 18 1.3 2.8e+02 4.5 0.8 1 23 1156 1178 1156 1178 0.92
Sequence Information
- Coding Sequence
- ATGTACTCCACTCATACGTCTTCAAGTTATTCTCCGTCGGTGTCGGACGGAACCATGACTCCAAATTCCTTACATCATCACCAGCACTTGGCTGTGCCACCACATTTGGCATTTGGCAGTCCCAGCTACGACGACGATGCTATGTTACAGACACACCAGCGTCTGCAAAGGCAGAAACCGAATGGCACTGTGGATGACACTGACTACGACAACGATGTCACCGAAAGGATTCACAAAAATGACACAAACCCATCCGAAGGGAATGCAGACAACGGCAACACGGCCACGGCCTCTGGCGAAAGTGCTGGGGAGCACCAACATCGCCCCCATCACCATCAGCATCTGAAGCGTAATGGACGTCATCATCGTTATGCTGAGCATGCCTTAAGAATTCCTTCCAAATTACGAAAAATCGAGAGGGATTCGGCATTGGGCAACGGTGGCAATGGCAGTGGCAGCGCCACAAATGCACTCAAGTTTGATAAGTTGACAGGCGATGGCATTAAAAGCGGCAACAATGCCGCCGTCAGTGCCGACGGATCCTATCAATGTCAGTTCTGTGATAAATCATTTCCGCGTCTTGGTTACTTAAAGAAGCATGAACAGAGCCATGCCGAGCACTTGCCCTTCAAGTGTGACTACTGTGCCCGATTATTTAAGCACAAGCGATCGCGGGACCGCCACACTAAGTTACATACTGGAGACCGTCGCTACAGATGCCCGCACTGCGAGGCCGCATTTTCCCGCAGTGACCACCTCAAGATCCATATGAAAACTCATGATAACCAAAAACCATTCCAATGTACGATATGTAACCGGGGCTACAATACTGCAGCCGCCTTGACATCTCACATGCAAAACCACAAAAAGCAGGCTGCTCTCCTAGCAGCGGGTGGAAACCCGCAGGCTCTAAACTACAGTCCTCGTTCCACGGGATCAGCTTCGAGCAATGGCAGTCTGCAGAAGAGACGATACGCGTTGGCCGTCGGCGGCGACAACAGTCCCAGTCGCGTTGACTTTGGCAAACGGGGAAGATCATCGTCATCAAATACACTGAAGTGTACATTCTGCTCGAAATCAGACTTCGTAACAATGGAACAGCTAAACTCACATCTTCAAACCCAGCACGAAAAAGAACTGGCGCATTCCATGACCCCACCTTCGGTGTCCAGTACTCCAACTGCAGACAATCAAGGCTTCCAGTTGACGTGCGAATATTGTACAATGAAATTTCCAAATATAGCGAGCATGTTTCAACACATGCGATCAGCGCATATAGACCGTCTGACCAGTCCCAATTCGTATTTCGAGCATTTCAATCGTCTTGCGGCTTCGGGTACCTTCAGTCCGCGTTTGCTAACTGGTCAGCCATTGAGAAGCTCAGCGAGTGCGGATGAGAACAGTATCAAAGAAGAACATAGTGCGACTAGTCCCAAGTCTTGTGACAACAGCGGAAGACAAAATGAGGATGAACCAACAGATTTAAGTCAAAACAATCGCAGGTCAATTACCCCCTCTTCTACTCCACAAAAGTCTCCTCAGGAAAGCGCGAGCGTGGATAAACCTGGTGTTTTTCTGTGCAACCAATGTAATGCAGGGCTGCCCAATTTTGAATCATTCCGCAACCATTTAAAGTCTCATATTGCTCAGGGTTTAAATTTGGTGTGTCACCACTGTGGTCTCATGGTGAGGGACCAATCCGAATACGAAAGGCATGTAATCTCCCACTTTCTCATAACTAATTCCGAGTACAACTGCTCGTCGAGCTGCCAAAAGTCATTTGGAAAGCCAGAGGAACTGCAAAAACATCTTATGGACCAACATGCCATAACCATGTATAAGTGCGGCCTTTGTAGTGAGATGTTCGAAACCAAGGTGGCCATACAAGTGCACTTTGCCTGTACTCATTCTGCTGAAAACAAAGTGATGCGCTGCTCTGCGTGCATGGATGTGTTTCGATCGGAAAATGACTTCAATGTGCATGTGAAATCAAGACACCAAGCAGTTAACAACAATATCCCTCCGGTAAATTCATTGCAGTGTATGTTTTGCCGTACCGTGTGCTCCTCCGATTTGGAAATGCAGTTTCATCTGGCTGCCCATGCCAGACAGTTCCGCTGTCCCTCTTGTCCGGAAACTTTCCATGTCGAATTTTTGTTAGATCGCCATATGCAAACCCACCATGGAGGATTGGAGCGTCCGCCGGTAACACAAAAGGATGCCTTTGAGGAACATGCCTCGCCCCTGGCCAACAACACCATCAGCCCCATGAATTCATTGTATGTGAACGCACTGTTTGGTAAGGGCCCCTTAATGCCGCTGAGTGCCcagaataataacaacaacattctAGACTACAACATGGCCTTTGCTTCGCATCTGAATAAGGGAATTTTCCCCAACACTGCagcaaacaaaatttataatCCGCTGCAGATCGACACGAACGCTATGAAACATTCGGCACTAATGTACGGGTTGTCCCAGCGATATTTCGATACAAATCGAACGGTAATGGAAATGtaccagcaacaacagcaacagcagcaccaCCAGGAAAATAGCAAGGGCCCGGGTAATTACTTTATAAGTCCAAAACAACCAGCAACTCCACACTTACCGCCGGAGGGTCATATACGCAACGAACTGCCCACATCACCACTGAACACGACGGGTTTCAGCTGTGGCATCTGTGAACGTAATGATTTCCGCACCGAGTCTGAAGTACATTCGCATCGGAAAATTGTTCACAATTTGAAGACGGGCGTTAGCCTGAAGTGCGCCTATTGTTCGGGCAACTTTAAGTCACGCAGCGAACTGGAACACCACATGAAGACTTGCCACAATTCAACATGCAAACACAAGTGTCTTATATGTGATGAAATCTTTCCCTCGCCGGCAATATTGGCTGAGCACAAACTACAGCACTCCAAAGTAGGCCAGTCCGGCAGATGCTCGCACTGCTCGAAACCACTGGCCGACGTAAATGCATTTAAGGTACATTTGACGGATCACAACGCAGAGGGTCAAATGCCGGTGCAGTGCATTTGCTGTCGCCAATCGCTACATTCCGAATTCGAAATAGGACTACATGCAAAatttcaCGTGAAGACTTCTAGCATAACGGAAAACGTGTGTGCTCTCTGTCTGGAACCCATCACCAATTCGCCCACAGAGGCAAAAGTTTGCGACAAATGTTGTCGCAAACACAACCTCAATAATAAATTCAAGCAACGGGATCATTTCGATCGTGCAAGCACCGAGACGAGACAATACGTTGCCAACCGTTGCAATCTCTGCAAAATGGTCCTACCCCACCCTCAGAAGCTACAGGAACATTTGGTGGAGCACACCTTTGCTGGATGTGAAGATCGAGGTTTCAACTGCTACATTTGTTCAGCCGTCTTTACTGTACCCGGAAGCTTGCTCAACCACATGCATGAGCATGGCACCAATTCAAAGCCATACGATTGCAACTTGTGCCCAGACAAATTCTATTTCCGTGCTGAACTAGACCACCATCTTGTCGATCATGACCTACGAGAAATGTGCCCACTTAAAAATGAAACTGAACACACGTCCCCTAAAGAAGAGATCACTGATCCCAAAAGTGCACAAATTACGCCACCGGCAAAACCCATGCTCCTCAATGAAGTTAAACAGGAGATAATCGAAATTAATCCAAATCAGCCAGGTGATGACGACGAATATATCGAGGTTGAAAAGCTGCACGATAACAATAATCAGGCGCCATCTAAATTGGAGCAGAGCAACGAAGACAATGAGGGTAGTATCGAGATGTCGGCCGACGAGAAGACCCACTAA
- Protein Sequence
- MYSTHTSSSYSPSVSDGTMTPNSLHHHQHLAVPPHLAFGSPSYDDDAMLQTHQRLQRQKPNGTVDDTDYDNDVTERIHKNDTNPSEGNADNGNTATASGESAGEHQHRPHHHQHLKRNGRHHRYAEHALRIPSKLRKIERDSALGNGGNGSGSATNALKFDKLTGDGIKSGNNAAVSADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQALNYSPRSTGSASSNGSLQKRRYALAVGGDNSPSRVDFGKRGRSSSSNTLKCTFCSKSDFVTMEQLNSHLQTQHEKELAHSMTPPSVSSTPTADNQGFQLTCEYCTMKFPNIASMFQHMRSAHIDRLTSPNSYFEHFNRLAASGTFSPRLLTGQPLRSSASADENSIKEEHSATSPKSCDNSGRQNEDEPTDLSQNNRRSITPSSTPQKSPQESASVDKPGVFLCNQCNAGLPNFESFRNHLKSHIAQGLNLVCHHCGLMVRDQSEYERHVISHFLITNSEYNCSSSCQKSFGKPEELQKHLMDQHAITMYKCGLCSEMFETKVAIQVHFACTHSAENKVMRCSACMDVFRSENDFNVHVKSRHQAVNNNIPPVNSLQCMFCRTVCSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHGGLERPPVTQKDAFEEHASPLANNTISPMNSLYVNALFGKGPLMPLSAQNNNNNILDYNMAFASHLNKGIFPNTAANKIYNPLQIDTNAMKHSALMYGLSQRYFDTNRTVMEMYQQQQQQQHHQENSKGPGNYFISPKQPATPHLPPEGHIRNELPTSPLNTTGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTCKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKPLADVNAFKVHLTDHNAEGQMPVQCICCRQSLHSEFEIGLHAKFHVKTSSITENVCALCLEPITNSPTEAKVCDKCCRKHNLNNKFKQRDHFDRASTETRQYVANRCNLCKMVLPHPQKLQEHLVEHTFAGCEDRGFNCYICSAVFTVPGSLLNHMHEHGTNSKPYDCNLCPDKFYFRAELDHHLVDHDLREMCPLKNETEHTSPKEEITDPKSAQITPPAKPMLLNEVKQEIIEINPNQPGDDDEYIEVEKLHDNNNQAPSKLEQSNEDNEGSIEMSADEKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01019641; iTF_00679873; iTF_00816802; iTF_00817803; iTF_01231870; iTF_01375195;
- 90% Identity
- -
- 80% Identity
- -