Basic Information

Gene Symbol
L
Assembly
GCA_963513945.1
Location
OY740720.1:97474147-97489550[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 8.5e-06 0.00073 20.7 1.7 1 23 221 243 221 243 0.98
2 19 0.68 58 5.3 5.7 1 23 249 271 249 271 0.98
3 19 3.7e-07 3.2e-05 25.0 3.1 1 23 277 299 277 299 0.99
4 19 1.7e-05 0.0015 19.8 0.3 1 23 305 327 305 327 0.98
5 19 0.47 41 5.8 1.3 2 23 393 416 392 416 0.91
6 19 0.00081 0.07 14.5 0.4 2 23 443 465 442 465 0.96
7 19 0.17 15 7.1 0.4 1 23 565 587 565 587 0.95
8 19 0.0035 0.3 12.5 1.4 2 23 595 616 594 616 0.96
9 19 0.00045 0.038 15.3 0.6 1 23 624 648 624 648 0.93
10 19 0.25 21 6.7 0.1 1 19 653 671 653 673 0.94
11 19 4.5 3.9e+02 2.7 0.6 1 23 683 706 683 706 0.91
12 19 0.0022 0.19 13.1 2.9 1 23 745 767 745 768 0.96
13 19 4.8 4.1e+02 2.6 0.9 1 23 940 964 940 964 0.89
14 19 0.0013 0.11 13.8 4.8 2 23 973 995 972 995 0.97
15 19 0.19 16 7.0 0.1 1 23 1001 1023 1001 1023 0.92
16 19 0.039 3.3 9.2 0.3 2 23 1031 1052 1031 1052 0.95
17 19 0.72 62 5.2 0.5 2 23 1143 1164 1143 1164 0.94
18 19 0.0058 0.5 11.8 0.1 1 23 1174 1196 1174 1196 0.97
19 19 0.59 50 5.5 0.7 1 23 1203 1225 1203 1225 0.95

Sequence Information

Coding Sequence
ATGATGGCTTTAAAGATGCTGTATCGGGGGCCCAGTTCAAGACTCGAAAATCTTATCGAAAAAATTCAAGCTACCAAGGAGATTGTTAATAACGACATGTATTCGACGCACACGTCATCGAGCTACTCACCTTCCATATCGGATGGTACCCTGACACCGAATTCCTTACATCACCACCAGCACTTGGCTGTGCCATCGCATTTGGCGTTTCCCCCCACCACCTACGAGGAGGATGCTCTGTTGCAGACACAGCAGCGCCTGCAGAGGCAAAAAACCAATGGCACCGTGGATGGCGCTGACTATGACAACGATGACGTCGAAAGGATACGCAAGAATGACACAAAGTCATCCGAAGAGAACGCCGCAGACACCAGCAACACCGCCACAGCAACAAATGTTGCCGACAGTGGCGCGGACCAACAGCACCAGCATCAACGccagcaccaccaccatcaccaccaaGCACAGCATCTCAAGCATAATGGACGTCATCATCGTTATGCTGAACATGCCCTGAGAATTCCTTCAAAATTACGCAAAACCGAAAGGGGCTCAGCGGTGGGCAACGGCGGCAGTGGCACAAACGCACTCAAGTTTGATAAGTTGACATGCGATGGCATTAAGAGCGGCAGCAATGCCGCTGCCAGTGCCGACGGATCCTATCAATGTCAGTTCTGTGATAAATCATTTCCGCGTCTTGGTTACTTGAAGAAGCACGAACAGAGTCATGCCGAACACTTGCCCTTCAAATGTGAGTACTGCGCCCGGCTCTTCAAGCACAAGCGTTCGCGAGACCGCCACACCAAATTGCATACGGGTGATCGACGTTACCGGTGTCCCCATTGTGAGGCCGCATTCTCCAGAAGCGACCATCTGAAGATCCACATGAAGACGCATGACAACCAAAAGCCATTCCAGTGCACCATATGCAATCGAGGTTATAATACAGCGGCAGCCCTGACGTCGCACATGCAAAATCACAAGAAGCAGGCTGCCCTGTTGGCGGCCGGGGGCAATGCTCAAGCTTTGAATTACAGTCCTCGTTCCACCGGATCGGCTTCGAGTAATGGGAGCCTGCAGAAGAGGCGGTATGCCTTGGCGGTGGGCGGCGGCGATCACAGTCCCAGTCGTGTTGAATTCAGCAAACGCAGCAAATCGTCGTCATCGAATATGTTAAAGTGTACATTCTGCTCAAAGTCGGATTTCACAACTGTGGAGCAACTGAACAGCCACCTCCAGACGCAGCACGAAAAGGAGTTAGTCCACTCTATGACACCGCCAACGACGGCAACTGCGCCACCAGCGGACGCGACCAATTTCCAGCTGACTTGCGAATACTGCACAATGAAGTTTTCCAATATTGCGGCAATGTTTCAACATATGCGCTCGGCACATATGGATCGCCTCACCAGTCCCAATTcgtattttgaacatttcaatCGTTTGGCGGCCTCGGGCACTTTCAGTCCTCGTTTACTGACCGGTCAACCGTTGCGGAGTTCTGCTAGTGCCGAAGAGAACAGCATCAAGGAGGAGCTCAACGTGACGAGTCCCAAGTCTCTGGATGCCAATGCCCGGCAAAGTGAGGATGAGCCCACGGACTTGAGTCAGAATAATCGCAGATCTGTTACGCCTTCGACAACGCCCCTCAAATCGCCTCACGAAAATGTGCCTGCCGAGAAACCGGGCGTATTTCTGTGTAATCAATGTAATGCTGGTTTGCCCGATTTCGAGTCCTTTCGCAATCATTTGAAATCGCACATAGCTCAAGGTTTGAACATGGTGTGTCACCACTGCGGCCTCATGCTGCGCGAGCAGTCCGAGTATGAGAGGCATGTCATCTCGCATTTCCTCATTACGAACTCCGAATACAATTGTTCGTCCAGTTGCCAGAAGTCCTTCGTGAAGCCGGATGAATTACAGAAACATCTCATGGACCAGCATGCCGTAACTATGTTTAAATGCGGGCTGTGCAGTGAAATGTTCGAAACTAAGGTGGCCATACAGGTTCACTTTGCCTGTGCACACTCCGCAGAGACGAAATTGTTCCGGTGCTCGGCATGTATGGATGTCTTCCGGTCGGAAAATGACTTTAATGTCCACGTGAAATCAAGACACCAGGCTGTGAACAACAACCCGCCACCGGTGAATTCGTTGCAATGTATGTTCTGTCGAACTGTATGCTCCTCCGATCTGGAAATGCAGTTCCACTTGGCAGCCCATGCCCGTCAATTCCGCTGCCCTTCTTGCCCGGAAACCTTTCATGTAGAGTTCCTATTGGATCGCCATATGCAAACCCACCACGCCGGTCTGGAGCGTCCACCAGCGATGCAGAAGGATGCCTTTGAAGAACACGCCTCTCCTATTGCCAACAATGCCATAAGCCCCATGAATTCATTGTACGTAAATGCCCTGTTCGGAAAGGGACCCCTAATGCCGCTGGCGGCCCAGAACAATAACAACAGTATTTTGGACTACAACATGGCGTTTGCGTCGCACCTCAACAAGGGTTTGTTCCCGAATACGACGTCCAATAAATTCTACAATCCTCTACAAATCGACACGAATGCCATGAAACACTCGGCCTTGATGTATGGATTGTCGCAACGATATTTCGATACAAATCGCACCGTAATGGAAATgtaccagcaacaacaacagcagcagcagcaacaacagcagcagcatcatcatcaccaaGAGAATAACAAAGCCGGCGGGAATTACTTTATAAGCCCAAAGCAACCGAGCACTCCACATTTACCGCCGGATGGTCACATACGCAGCGAGCTGTCACCGTCGCCCATGAACACCGGCTTCAGCTGTGGCATCTGCGAGCGCAACGACTTCCGCACCGAATCTGAGGTACACTCGCATCGTAagatcgtccacaatttgaagaCCGGAGTCAGTCTAAAATGTGCATATTGTTCGGGCAACTTTAAGTCTCGCAGCGAACTGGAACACCACATGAAGACCTGCCACAATTCGACGGGCAAGCACAAGTGTCTGATATGCGATGAAATCTTCCCCTCGCCGGCAATATTGGCAGAGCACAAATTGCAGCACTCCAAGGTTGGCCAGTCGGGCAGATGCTCCCATTGCTCCAAACCATTGGCCGATGTGAGTGCATTCAAAGCACATCTGGCCGAACACAACACCGAGGGTCAGATGCCAGTACATTGCATATGTTGCCGTCAATCGCTGCATTCCGAATTCGAAATTGGTCTGCATGCAAAATTCCACGTGAAAGTTTCCACTGTTGCGGAGAATGCATGTGCTCTTTGTCTGGAACCCATCACCAATTCACCCGCCGAGGCCAAGGTATGCGAAAAGTGTTGCCGCAAACACAATCTCAACAATAAATTCAAGCAGCGCGATCATTACGAGCGACCCAATCCCGAACTCAGGCAATACATTGCGAATCGCTGCAATCTCTGCAAAATGATCCTGCCTCATCCTCAGAAACTGCAGGAACATTTGGTGGAGCACACTTTTGCCGGCTGCGAAGATCGAGGCTTCAACTGTTACATCTGCTCGTCCGTCTTTACGGTGCCCGCAGGCCTACTCAATCACATGCAGGAGCACGGCATCAACTCTAAGCCGTACGATTGCAACCTGTGCCCCGACAAATTCTACTTCCGCGCTGAATTGGATCACCATCTCATCGACCACGACCAACGAGAGATATCTCCACTAAAGAACGAAAATGAGCACACCCCCCCTAAAGAGGAGAATGCAGCTGATGTCAACAGTTCCGAAATGATGCAACCGGAAAAACCATTGCTCTTGAATGAGGTCAAGCAGGAAATAATCGAGAACGACCACCACAATCAGCCGGAGGATGATGAGTACATCGAGGTGGAAAAGCTGCACGACAACAACAATCAAGTGCCATCCAAAGTAGAGGAGAAGGACGACGCCAAAGAAACCATTGAAATGTCTAGCGGAGGCGAGAAGATCCTCTAA
Protein Sequence
MMALKMLYRGPSSRLENLIEKIQATKEIVNNDMYSTHTSSSYSPSISDGTLTPNSLHHHQHLAVPSHLAFPPTTYEEDALLQTQQRLQRQKTNGTVDGADYDNDDVERIRKNDTKSSEENAADTSNTATATNVADSGADQQHQHQRQHHHHHHQAQHLKHNGRHHRYAEHALRIPSKLRKTERGSAVGNGGSGTNALKFDKLTCDGIKSGSNAAASADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNAQALNYSPRSTGSASSNGSLQKRRYALAVGGGDHSPSRVEFSKRSKSSSSNMLKCTFCSKSDFTTVEQLNSHLQTQHEKELVHSMTPPTTATAPPADATNFQLTCEYCTMKFSNIAAMFQHMRSAHMDRLTSPNSYFEHFNRLAASGTFSPRLLTGQPLRSSASAEENSIKEELNVTSPKSLDANARQSEDEPTDLSQNNRRSVTPSTTPLKSPHENVPAEKPGVFLCNQCNAGLPDFESFRNHLKSHIAQGLNMVCHHCGLMLREQSEYERHVISHFLITNSEYNCSSSCQKSFVKPDELQKHLMDQHAVTMFKCGLCSEMFETKVAIQVHFACAHSAETKLFRCSACMDVFRSENDFNVHVKSRHQAVNNNPPPVNSLQCMFCRTVCSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHAGLERPPAMQKDAFEEHASPIANNAISPMNSLYVNALFGKGPLMPLAAQNNNNSILDYNMAFASHLNKGLFPNTTSNKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRTVMEMYQQQQQQQQQQQQQHHHHQENNKAGGNYFISPKQPSTPHLPPDGHIRSELSPSPMNTGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLKCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCSHCSKPLADVSAFKAHLAEHNTEGQMPVHCICCRQSLHSEFEIGLHAKFHVKVSTVAENACALCLEPITNSPAEAKVCEKCCRKHNLNNKFKQRDHYERPNPELRQYIANRCNLCKMILPHPQKLQEHLVEHTFAGCEDRGFNCYICSSVFTVPAGLLNHMQEHGINSKPYDCNLCPDKFYFRAELDHHLIDHDQREISPLKNENEHTPPKEENAADVNSSEMMQPEKPLLLNEVKQEIIENDHHNQPEDDEYIEVEKLHDNNNQVPSKVEEKDDAKETIEMSSGGEKIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01175574;
90% Identity
iTF_00816802;
80% Identity
-