Basic Information

Insect: Perizoma flavofasciatum
Gene Symbol: -
Assembly: GCA_958496245.1
Location: OY292447.1:4847549-4849417[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.3 2e+02 3.1 0.0 3 23 100 121 98 121 0.83

2 14 0.69 42 5.2 2.0 2 23 142 163 141 164 0.93

3 14 0.00016 0.01 16.7 2.1 1 23 169 192 169 192 0.96

4 14 0.014 0.84 10.6 3.8 1 23 197 220 197 220 0.93

5 14 0.001 0.064 14.1 2.5 2 23 223 245 222 245 0.95

6 14 7.8 4.8e+02 1.9 0.2 2 20 252 270 251 272 0.91

7 14 0.0015 0.094 13.6 2.0 1 23 329 352 329 352 0.98

8 14 0.0064 0.39 11.6 0.2 2 23 427 449 426 449 0.92

9 14 3.1e-05 0.0019 18.9 0.5 3 23 456 477 455 477 0.95

10 14 0.00082 0.05 14.4 3.8 2 23 482 504 481 504 0.95

11 14 0.01 0.62 11.0 0.4 1 23 509 532 509 532 0.97

12 14 0.0011 0.065 14.1 5.5 1 23 536 559 536 559 0.97

13 14 0.042 2.6 9.1 1.7 3 23 567 587 566 587 0.96

14 14 2.4e-06 0.00015 22.4 1.3 1 23 593 615 593 615 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.3	2e+02	3.1	0.0	3	23	100	121	98	121	0.83
2	14	0.69	42	5.2	2.0	2	23	142	163	141	164	0.93
3	14	0.00016	0.01	16.7	2.1	1	23	169	192	169	192	0.96
4	14	0.014	0.84	10.6	3.8	1	23	197	220	197	220	0.93
5	14	0.001	0.064	14.1	2.5	2	23	223	245	222	245	0.95
6	14	7.8	4.8e+02	1.9	0.2	2	20	252	270	251	272	0.91
7	14	0.0015	0.094	13.6	2.0	1	23	329	352	329	352	0.98
8	14	0.0064	0.39	11.6	0.2	2	23	427	449	426	449	0.92
9	14	3.1e-05	0.0019	18.9	0.5	3	23	456	477	455	477	0.95
10	14	0.00082	0.05	14.4	3.8	2	23	482	504	481	504	0.95
11	14	0.01	0.62	11.0	0.4	1	23	509	532	509	532	0.97
12	14	0.0011	0.065	14.1	5.5	1	23	536	559	536	559	0.97
13	14	0.042	2.6	9.1	1.7	3	23	567	587	566	587	0.96
14	14	2.4e-06	0.00015	22.4	1.3	1	23	593	615	593	615	0.99

Sequence Information

Coding Sequence: ATGAAAAAGTACTACAGagacaataatttaatttcagatgAAACGCCCGCCCCCCCGGTCGACCGAATAACGGAGCGAAGAAGGAAAAACTTGAAAACTATATTCGATAACACGACAATTCTCCCCTTCAAATGGCGAGGATCCCACATCTGTTTCTATTGTAGCATTCCTATCCACGATTACTTAGAATTCAGAAAGCACACTAAATCCCACGGCCATTGCAGCACTAACACCTATGCTATGAAAAAACTAAAGGGGAACGGGCTGGCGATTAATCTCGACGTATCAGAGATCGCGTGTGAACTCTGCGAGCAACAATTCAAAAGCTTGGAAGTGATCGTGGAACATTTGATAAACGAACATAATTTGTTCTACGACAAGGATATTTACAGTGAAATCGTAGAGTATAGGTTGATAGACTTGCGATGTACACAATGTGACATGCAGTTTGAAGCGTTCAGGCGCCTTGTATCTCACGTCAACAAGCATCATTCGTTGAACAGTTTTGTCTGTCACGACTGCGGACGCAAGTTCAATAAGAAAAGGGATATATCGGCCCACGTGAATAGCTACCATCGATTAGGAGGTTACGTCTGTAAACAGTGCGGATTAGAGTGTAAAAGTCGTCTAGAATTGCGGAAACACACAGCGCACACGCATCTGACACGATGCCACGTTTGCGGCAAGAAATTCATGTACTTGAATAAGCTGTTGAAGCACGTTAAGCTCGAACATCCGAACGATGATAATAAAACGTGTGGCTATTGCATGAAAGAGTTGCATTCAGCGGTCGGTCTGAAACAGCACATTGTTAAATGCAAAGTGAAATTGCTCTCCCTAGTCGAGACAGAAAGCGTAGCGACCCCTGAAAGCAAAAACTCCGTAAACACCTCTCGAACGCACGAACAGATAGTACGTATCCGCCAGAATATTCAGTGTGTCCTCAACATGTCCACAGCGGTGCCCTTCAAGTTTAGAGTAAAATTCTCCTGTTTCTACTGCTCTCTCAAGTTTGACGATTACGAAGTGCTCAAAAAACATACTCGTACTGAGCATACCGTATGCGACATCAAAAGTAAGCCGATGAAAACATGTAAAGGCAAACGCACATTTGTCAGGGTCGATATAGCTGAGCTCGCTTGTAAACTGTGCATTGCTCCAATGCCGGACTTAGAACATTTTATCGATCATGCTATCACCGCTCATGGTGCAGACTATGACAAATCCGTCAGCCTCGAAACTTGCTTCGAGCCTTACCGTTTACACAAAGGCAACATTCCATGTCTAGAATGTCCCAAAGTGTTCCGATACCTGAACACTATGCTGAGGCATTTCAATTTGGAGCACAGTAACAATAATGAGATATGCGATTACTGCGGCCGCGGTTTCCGTAGCACCACCAACTTGAAAATGCACCTGCAGAACGCCCACACTGGTTCCTGCGAATGTAAGATTTGCAACGCCAAGTTCAAGAATCATTCTGTTCTGGTGCGTCACATGGCGAAAACTCACAACGAGAAGACTTTCAAATGCGCTAACTGCTCGGAGATGTTCGAGTCTGCGTATCAGAGGCAGTTGCATCTGATCAAAGTGCACGGTATCGGGCACAAGTGCGAATATTGCGGGAAGATGTTTACGAAGCATTCGTTTATGGATATACACGTGAGGCGAACGCATTTGAAGGAGAAGAACGTCGCATGCTCTGTTTGCAATGATAAGTTTTTCGACAACCACTTGCTACGAATGCACATGGTAAAGCATGATGGCGAGAGGAAGTTTAAATGCGAGCTTTGTGGGAAAGCCTTTCTTAGACAAAAGAATTTACGAACTCACATGGACACTCATAAGAAATACGGTTTTGTGCAGTGA
Protein Sequence: MKKYYRDNNLISDETPAPPVDRITERRRKNLKTIFDNTTILPFKWRGSHICFYCSIPIHDYLEFRKHTKSHGHCSTNTYAMKKLKGNGLAINLDVSEIACELCEQQFKSLEVIVEHLINEHNLFYDKDIYSEIVEYRLIDLRCTQCDMQFEAFRRLVSHVNKHHSLNSFVCHDCGRKFNKKRDISAHVNSYHRLGGYVCKQCGLECKSRLELRKHTAHTHLTRCHVCGKKFMYLNKLLKHVKLEHPNDDNKTCGYCMKELHSAVGLKQHIVKCKVKLLSLVETESVATPESKNSVNTSRTHEQIVRIRQNIQCVLNMSTAVPFKFRVKFSCFYCSLKFDDYEVLKKHTRTEHTVCDIKSKPMKTCKGKRTFVRVDIAELACKLCIAPMPDLEHFIDHAITAHGADYDKSVSLETCFEPYRLHKGNIPCLECPKVFRYLNTMLRHFNLEHSNNNEICDYCGRGFRSTTNLKMHLQNAHTGSCECKICNAKFKNHSVLVRHMAKTHNEKTFKCANCSEMFESAYQRQLHLIKVHGIGHKCEYCGKMFTKHSFMDIHVRRTHLKEKNVACSVCNDKFFDNHLLRMHMVKHDGERKFKCELCGKAFLRQKNLRTHMDTHKKYGFVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00633035;
90% Identity: iTF_01170877;
80% Identity: -