Basic Information

Insect: Perizoma affinitatum
Gene Symbol: -
Assembly: GCA_961405105.1
Location: OY560188.1:3593253-3595868[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.1 3.3e+02 2.5 0.0 3 23 143 164 141 164 0.82

2 14 0.52 33 5.6 1.5 2 23 185 206 184 207 0.93

3 14 0.00018 0.012 16.5 2.1 1 23 212 235 212 235 0.96

4 14 0.015 0.97 10.5 3.8 1 23 240 263 240 263 0.93

5 14 0.0011 0.074 14.0 2.5 2 23 266 288 265 288 0.95

6 14 4.1 2.6e+02 2.8 0.3 2 20 295 313 294 315 0.92

7 14 0.0064 0.41 11.6 1.3 1 23 372 395 372 395 0.96

8 14 0.007 0.45 11.5 0.2 2 23 470 492 469 492 0.92

9 14 3.3e-05 0.0022 18.8 0.5 3 23 499 520 498 520 0.95

10 14 0.0009 0.058 14.3 3.8 2 23 525 547 524 547 0.95

11 14 0.011 0.71 10.9 0.4 1 23 552 575 552 575 0.97

12 14 0.0012 0.075 14.0 5.5 1 23 579 602 579 602 0.97

13 14 0.046 3 9.0 1.7 3 23 610 630 609 630 0.96

14 14 2.6e-06 0.00017 22.3 1.3 1 23 636 658 636 658 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.1	3.3e+02	2.5	0.0	3	23	143	164	141	164	0.82
2	14	0.52	33	5.6	1.5	2	23	185	206	184	207	0.93
3	14	0.00018	0.012	16.5	2.1	1	23	212	235	212	235	0.96
4	14	0.015	0.97	10.5	3.8	1	23	240	263	240	263	0.93
5	14	0.0011	0.074	14.0	2.5	2	23	266	288	265	288	0.95
6	14	4.1	2.6e+02	2.8	0.3	2	20	295	313	294	315	0.92
7	14	0.0064	0.41	11.6	1.3	1	23	372	395	372	395	0.96
8	14	0.007	0.45	11.5	0.2	2	23	470	492	469	492	0.92
9	14	3.3e-05	0.0022	18.8	0.5	3	23	499	520	498	520	0.95
10	14	0.0009	0.058	14.3	3.8	2	23	525	547	524	547	0.95
11	14	0.011	0.71	10.9	0.4	1	23	552	575	552	575	0.97
12	14	0.0012	0.075	14.0	5.5	1	23	579	602	579	602	0.97
13	14	0.046	3	9.0	1.7	3	23	610	630	609	630	0.96
14	14	2.6e-06	0.00017	22.3	1.3	1	23	636	658	636	658	0.99

Sequence Information

Coding Sequence: ATGAAGATAAGCGAAATTGGTCTCATTTTCATCCCTACTTTCTTCATCAGTGCCCTGGCCATCCTCAGGAGGATACAAAATGATGTCACCAGGGTCTTCTTATCTTCTAATGCATTCAAGAATTCGTGCAACGCCAACCTAAAGGAAGATAAACACACTCCAAACGatGAAACGCCCGCCCCCCTGGTCGACCGAATAACGGAGCGAAGAAGGAGAAACTTGAAAACTATATTTGATAACACGACAATTCTCCCCTTCAAATGGCGAGGATCGCACATCTGTTTCTATTGTAGCATTCCTATCCACGATTACTTAGAATTCAGAAAGCACACTAAATCTCACGGCCATTGTAGCACTAACACCTATGCTATGAAAAAACTAAAGGGGAACGGGCTGGCGATTAATCTCGACGTATCAGAGATCGCGTGTGAACTCTGCGAGCAACAATTCAAAAGCATGGAAGTGGTCGTGGAACATTTGATAAACGAACATAAATTGTTCTACGACAAGGATATTTACAGTGAAATCGTAGAATATAGGTTGATAGACTTACGATGCACGCAGTGTGACATGCAGTTTGAAGCGTTCAGGCGCCTTGTATCTCACGTCAACATGCATCATTCGCTGAACAGTTTTGTCTGTCACGACTGCGGACGCAAGTTCAATAAGAAAAGGGATATATCGGCTCACGTGAATAGCTACCACCGATTAGGAGGATACGTCTGTAAACAGTGCGGATTAGAGTGTAAAAGTCGTCTAGAATTGCGGAAACACACAGCGCACACGCATCTGACACGATGCCACGTTTGCGGCAAGAAATTCATGTACTTGAATAAGTTGTTGAAGCACGTCAAGCTCGAACATCCGAACGATGATAATAAAACATGTGGCTATTGCATGAAAGAGTTGCATTCAGCGGTCGGTCTTAAACAGCACATGGTTAAATGCAAAGTGAAGTTGCTCTCACTAGTCGAGACAGAAAGCGTAGCAATCCCTGAAATCAAAAACTCTGTAAACCCCTCTCGAACGCACGAACAGATAGTACGTATCCGACAGAATATTCAATGCGTCCTGAACATGTCCACAGCGGTGCCCTTCAAGTTCAGAGTTAAATTCTCCTGTTTCTACTGCTCTCTCAAGTTTGATGATTACGAAGTACTCAAAAAACATACTCGTGCTGAGCATACCGTATGCGACATCAAAAGCAAGCCGATGAAAACATGTAAAGGCAAACGCACATTTGTCAGGGTCGATATAGCTGAGCTCGCTTGTAAACTGTGCCTTGCTCTCATGCCGGACTTAGAACACTTTATCGATCATGCCATCTCCGCTCATGATGCTGACTATGACAAATCCGTCAGCCTAGAAACTTGCTTCGAGCCTTACCGTTTACACAAAGGCAACATACCATGTCTTGAATGTCCCAAAGTGTTCCGATACCTGAACACTATGCTGAGGCATTTCAATTTGGAGCACAGTAACAACAATGAGATATGCGACTACTGTGGCCGCGGTTTCCGTAGCACTACCAACTTGAAAATGCACCTTCAAAACGCCCACACTGGCTCCTGCGAATGTAAAATATGCAACGCCAAGTTCAAGAATCATTCTGTTCTGGTGCGTCACATGGCGAAAACTCACAATGAGAAGACTTTCAAATGCGCTAACTGCTCAGAGATGTTCGAGTCTGCGTATCAGAGGCAGCTACATTTGATCAAAGTGCACGGTATCGGGCACAAGTGCGAGTATTGTGGTAAGATGTTTACGAAGCATTCGTTTATGGATATACACGTGAGGCGAACCCATTTGAAGGAGAAGAACGTCGCATGCTCTGTTTGCAATGATAAGTTTTTCGACAACCACTTGCTGCGAATGCACATGGTAAAGCATGATGGTGAGAGGAAGTTTAAATGCGAGCTTTGTGGGAAAGCCTTTCTCAGACAAAAGAATTTACGAACTCACATGGACACTCATAAGAAATACGGTTTTGTGCAGTGA
Protein Sequence: MKISEIGLIFIPTFFISALAILRRIQNDVTRVFLSSNAFKNSCNANLKEDKHTPNDETPAPLVDRITERRRRNLKTIFDNTTILPFKWRGSHICFYCSIPIHDYLEFRKHTKSHGHCSTNTYAMKKLKGNGLAINLDVSEIACELCEQQFKSMEVVVEHLINEHKLFYDKDIYSEIVEYRLIDLRCTQCDMQFEAFRRLVSHVNMHHSLNSFVCHDCGRKFNKKRDISAHVNSYHRLGGYVCKQCGLECKSRLELRKHTAHTHLTRCHVCGKKFMYLNKLLKHVKLEHPNDDNKTCGYCMKELHSAVGLKQHMVKCKVKLLSLVETESVAIPEIKNSVNPSRTHEQIVRIRQNIQCVLNMSTAVPFKFRVKFSCFYCSLKFDDYEVLKKHTRAEHTVCDIKSKPMKTCKGKRTFVRVDIAELACKLCLALMPDLEHFIDHAISAHDADYDKSVSLETCFEPYRLHKGNIPCLECPKVFRYLNTMLRHFNLEHSNNNEICDYCGRGFRSTTNLKMHLQNAHTGSCECKICNAKFKNHSVLVRHMAKTHNEKTFKCANCSEMFESAYQRQLHLIKVHGIGHKCEYCGKMFTKHSFMDIHVRRTHLKEKNVACSVCNDKFFDNHLLRMHMVKHDGERKFKCELCGKAFLRQKNLRTHMDTHKKYGFVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00633035;
90% Identity: iTF_01171748;
80% Identity: -