Basic Information

Insect: Perizoma flavofasciatum
Gene Symbol: -
Assembly: GCA_958496245.1
Location: OY292430.1:4441535-4466363[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9.9e-05 0.0061 17.3 1.5 1 23 415 437 415 437 0.96

2 20 0.00032 0.02 15.7 1.0 1 20 443 462 443 465 0.94

3 20 0.0012 0.073 13.9 4.6 1 23 484 506 484 506 0.97

4 20 0.00011 0.0068 17.2 4.1 1 23 512 534 512 534 0.99

5 20 4.3e-05 0.0026 18.5 5.3 1 23 540 562 540 562 0.97

6 20 6.1e-06 0.00037 21.1 8.4 1 23 568 590 568 590 0.97

7 20 1.1e-06 6.9e-05 23.5 2.1 1 23 596 618 596 618 0.98

8 20 0.00012 0.0072 17.1 6.7 1 23 624 646 624 646 0.97

9 20 0.00012 0.0071 17.1 6.5 1 23 652 674 652 674 0.97

10 20 5.6e-07 3.4e-05 24.4 1.9 1 23 680 702 680 702 0.98

11 20 7.1e-05 0.0044 17.8 8.1 1 23 708 730 708 730 0.98

12 20 0.00015 0.0092 16.8 6.8 1 23 736 758 736 758 0.97

13 20 1.1e-05 0.00067 20.4 6.0 1 23 764 786 764 786 0.98

14 20 7.8e-06 0.00048 20.8 6.7 1 23 792 814 792 814 0.97

15 20 1.8e-05 0.0011 19.7 5.1 1 23 820 842 820 842 0.98

16 20 2.7e-06 0.00017 22.3 3.8 2 23 849 870 848 870 0.98

17 20 1.9e-05 0.0012 19.6 8.0 1 23 876 898 876 898 0.97

18 20 6.6e-05 0.004 17.9 6.3 1 21 904 924 904 926 0.94

19 20 0.00038 0.023 15.5 0.3 1 23 933 955 933 955 0.97

20 20 0.048 3 8.9 5.0 1 23 965 987 965 987 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9.9e-05	0.0061	17.3	1.5	1	23	415	437	415	437	0.96
2	20	0.00032	0.02	15.7	1.0	1	20	443	462	443	465	0.94
3	20	0.0012	0.073	13.9	4.6	1	23	484	506	484	506	0.97
4	20	0.00011	0.0068	17.2	4.1	1	23	512	534	512	534	0.99
5	20	4.3e-05	0.0026	18.5	5.3	1	23	540	562	540	562	0.97
6	20	6.1e-06	0.00037	21.1	8.4	1	23	568	590	568	590	0.97
7	20	1.1e-06	6.9e-05	23.5	2.1	1	23	596	618	596	618	0.98
8	20	0.00012	0.0072	17.1	6.7	1	23	624	646	624	646	0.97
9	20	0.00012	0.0071	17.1	6.5	1	23	652	674	652	674	0.97
10	20	5.6e-07	3.4e-05	24.4	1.9	1	23	680	702	680	702	0.98
11	20	7.1e-05	0.0044	17.8	8.1	1	23	708	730	708	730	0.98
12	20	0.00015	0.0092	16.8	6.8	1	23	736	758	736	758	0.97
13	20	1.1e-05	0.00067	20.4	6.0	1	23	764	786	764	786	0.98
14	20	7.8e-06	0.00048	20.8	6.7	1	23	792	814	792	814	0.97
15	20	1.8e-05	0.0011	19.7	5.1	1	23	820	842	820	842	0.98
16	20	2.7e-06	0.00017	22.3	3.8	2	23	849	870	848	870	0.98
17	20	1.9e-05	0.0012	19.6	8.0	1	23	876	898	876	898	0.97
18	20	6.6e-05	0.004	17.9	6.3	1	21	904	924	904	926	0.94
19	20	0.00038	0.023	15.5	0.3	1	23	933	955	933	955	0.97
20	20	0.048	3	8.9	5.0	1	23	965	987	965	987	0.98

Sequence Information

Coding Sequence: ATGAACCCAGAGCACCACAATATCAATACGGGTGGAGGCCAGCCTCCCGGGACTTCAGAGTCTCAGAATCAGAGGGTACAGGTTCAGCAGCAGCAAGTGAGTCTGCCTGCAACCACCTCTGCCACTGACTTACGAGTCAATTCAGCAGCTGTGAACGTTGCATTATCCAGCGTTGCGAAGTATTGGGTGTTTACGAATTTATTCCCTGGACCGATTCCCCAAGTGTCCGTCTATGGGCTACCAACAGGGACCAGGATCGAAAATGGAAAAGCAGTGCAGGATCTCGGTCAAGCACATAGCATACTCAATGGGGATCCAAATATCATCCTTGGACATCACGGTGGGCAGCCACAGGTCACAGTATCTGCGGCCCAACAGATTCCTGTCTCACAGATCATTGCCACCCAGTCTAGCCAGCCACATGAAGCATTGGTGGCACACAGCCAACAGCAGGAGCTGCAGGCCACCAACCAGGTGCAGGTCACTACGGCCCATCATCAGGTACCCACTAACCGGGTCGAGTTTGTTCAACACCATAACATTGATATGGGTCATCATGCTCAGCAACAGCATATattgcagcagcagcagcagcagcagctaATGGCGGCAGCCCGTCCAGAACACTCCAATCAACAGATCCAGCTGACTGTAAGTGAGGATGGTATTGTGACGGTCGTGGAACCAGGCAGCAGTAAGATGGCTGAGAAGGAAGATCTACATGAAACGATCAAGCTGCCGGCGGACCACACGCTGACTGTGCATCAGCTGCAGCAGATTGTCGGCCAGCAAGTGCTAGACAGCGTGGTTCGCATCGAGCAAGCGACCGGCGAACCCGCTAACATTCTCGTCACCCACAATCCAGACGGTACCACGTCAATCGAAGCAAGCGCTGGCGACTCACTAGCTATCGTCAAAGATGAGAAAAACCAAGGAAAAATGGAAACGGCACAGTTCGCTATACCTACAGAGATAAAGGAAATGAAAGGCATTGATTTGAAGGCTGTGAATGCAATGAACATGGAAGGTGCAGTCGTGAAGATATCAGCGGGCGCCCCTGAGCACGACCTGCACGCCATGTACAAAGTGAATGTGGAGGATCTCTCGCAGCTGTTGGCGTACCACGAAGTCTTCGGCAAGATGGGACCGGACGGACAGCCGCAGGCCAAAGTTAGCGATGTAGAAATAGATGTGCCGGGAACAAGCTCCGGAATGTCTGAAGCGGAATCGTCGCCCGGCCACCACGCATGCGACATCTGCGGGAAAATATTCCAGTTCCGCTATCAGCTTATTGTTCACAGacGTTACCACGGCGAGACCAAGGCTTTCACGTGCCAAGTATGCGGCACTTCATTTGCGAACCCCGTAGAACTATCCCGGCACGGCAAGTGCCATCTTGCCGGTGACCCAGCCGAAAGACACGCCAAGAGAATGGCCCAAGACAAACCTTATGCATGCGCCACTTGCCATAAAACGTTCTTGCGTAAGGAGCATCTAAACAACCACGTCCGCAGTCACACAGGGGAAACGCCATACAGATGCGAGTTCTGCGCCAAAACGTTCACCCGTAAAGAGCACATGGTAAACCACGTGCGCAAACACACAGGGGAGACGCCGCATCGATGCGATATCTGCAAGAAGAGCTTTACCAGAAAGGAACATTTTATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTACGATTTGCGGAAAGAAGTATACTAGAAAGGAACATTTGACAAACCATATGAGATCGCACACGAACGATACGCCGTTCCGATGCGATTTATGCGGGAAAGCCTTCACGAGAAAAGAACACTACACCAATCACATTATGTGGCACACTGGCGAAACTCCACACCGCTGCGACTTCTGCTCCAAAACGTTTACGCGCAAAGAGCATTTGCTCAACCACGTGAGACAACACACGGGCGAATCTCCGCATCGCTGTAACTTCTGTTCGAAGTCTTTCACGCGTCGCGAACACCTGGTGAATCACGTGCGGCAACACACGGGGGAGACGCCCTTCCAATGCGGATACTGCCCGAAAGCTTTCACAAGGAAAGACCACCTTGTGAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACAAGTGCTCATTCTGCACGAAGACGTTCACGCGCAAGGAGCACCTCACGAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCATCGCTGCACATTCTGCGCTAAGTCATTCACCAGGAAGGAGCATCTCACCAACCATGTTAGACAGCATACGGGCGAAACGCCACACAAGTGCACGTATTGCCCGCGCGAGTTCTCGAGAAAGGAGCACTTGAACAGCCATCTGCGGCAACACACGGGGGTCACGCCGCACTCCTGCTCTTACTGTAACAAGACCTTCACGAGGAAGGAGCATCTCGTCAATCACGTACGGAAACACACCGGCGAAACTCCGTTCAAGTGCACATTCTGTTCGAAGTCTTTCTCCCGCAAGGAGCATCTAACGAGTCACGTGAATCTGCATACTGGAGAGACGCCGAACAAATGCCCATTCTGCACTAAAACCTTCTCTAGAAAGGAACATCTTACCAATCATGTCAGAATCCACACGGGTGAATCGCCGCATCGCTGTGAATTCTGCCAGAAGACGTTTACTCGGAAGGAACACCTCACGAACCATATGAAACAGCACACGGGAGACGCGGCTCACATGTGCAAAGTTTGCCAGAAACCTTTCTCCAGGAAGGAGCATTTACAGGCGCACATGAGGTGTCACAGTTGCGGCGACCGGCCTTACAGCTGCGGTGAATGCGGCAAGTCGTTCCCGCTGAAGGGTAACCTCATGTTCCACGAGCGATCCCACAACAAGGCGGGCGCCGGCCCGAGGCCGTTCCGATGCGATATCTGCTCTAAGGACTTCATGTGCAAAGGACATTTACTAACTCACCGGCGGATACACGCAGAGGCCGGCGACGAAGCCGCCACAGAGAACCAGACTGAGAATGAAGAGTGTCTCACCGTAACCACAGACTGCACCAACAAATGCATCAAGGTGGAGCTTGAGACCGTTGAACGGACGGAGCCAAGATCTTCAATAGAAAATGGACCCACTGAAAACAATATAGTAGTGCAGCCTGCACTTAGCGATTCTCCGAACCACATTGTAACTCAAAGTCAAAACACCGTGATGCAGATAAGCAGCCAACAAGTACGTGTCCCGTCATCGAGCCCGACCGGTGCCGGCGGCACGACGCCCGGCACGTTCTCGCACACGGTGAGCGCGCAGCACCACGTGGGCACAGCCATCTCCCACCATCCCGTCACCGTCAACTACTAG
Protein Sequence: MNPEHHNINTGGGQPPGTSESQNQRVQVQQQQVSLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKAVQDLGQAHSILNGDPNIILGHHGGQPQVTVSAAQQIPVSQIIATQSSQPHEALVAHSQQQELQATNQVQVTTAHHQVPTNRVEFVQHHNIDMGHHAQQQHILQQQQQQQLMAAARPEHSNQQIQLTVSEDGIVTVVEPGSSKMAEKEDLHETIKLPADHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDSLAIVKDEKNQGKMETAQFAIPTEIKEMKGIDLKAVNAMNMEGAVVKISAGAPEHDLHAMYKVNVEDLSQLLAYHEVFGKMGPDGQPQAKVSDVEIDVPGTSSGMSEAESSPGHHACDICGKIFQFRYQLIVHRRYHGETKAFTCQVCGTSFANPVELSRHGKCHLAGDPAERHAKRMAQDKPYACATCHKTFLRKEHLNNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLTNHMRSHTNDTPFRCDLCGKAFTRKEHYTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKTFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGETPHKCTYCPREFSRKEHLNSHLRQHTGVTPHSCSYCNKTFTRKEHLVNHVRKHTGETPFKCTFCSKSFSRKEHLTSHVNLHTGETPNKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDAAHMCKVCQKPFSRKEHLQAHMRCHSCGDRPYSCGECGKSFPLKGNLMFHERSHNKAGAGPRPFRCDICSKDFMCKGHLLTHRRIHAEAGDEAATENQTENEECLTVTTDCTNKCIKVELETVERTEPRSSIENGPTENNIVVQPALSDSPNHIVTQSQNTVMQISSQQVRVPSSSPTGAGGTTPGTFSHTVSAQHHVGTAISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00704247;
90% Identity: iTF_00701278;
80% Identity: -