Pace016971.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Periphyllus acericola
Gene Symbol
PAXBP1
Assembly
GCA_949715065.1
Location
OX454269.1:2319791-2325368[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.73 9.7e+03 -3.6 0.0 58 94 276 313 273 329 0.70
2 2 1.9e-26 2.5e-22 80.4 6.8 4 272 542 751 539 753 0.92

Sequence Information

Coding Sequence
ATGgcaatgcaatttaaaaaaccCAAACGAAATTTACGAGTCAGAGACACTGACGGTCTTTATGATAATGAAAATGAAGAACAAACAGATGTAGATGCTGTACTTAAACTGTCAAAAtcacataaagaaaaaatattgaagaaaattaatactttgaGCTTTGGTGATGAGTTAAATGaatGTGATGATGGTGAagaatttaaagttaaaaaatcatcttatagtaagaaaattaaaaaacaaatgaataaagAAAAGATGGGTCgagataaaatagaaaatggCAAGAAATCTAAGATTATAAATGATACAAAAAGACCAATTAAAGAGAAACAAACAAATGTTAACtCACAACCtgtagaaaaagaaataatgctAACAGGTCGTGCTGCTGAAATGGCCGGCTATGAATCATCTGATGAAGAACCTGATTCATATAACTCATCATCACATCGGTTTTCTAACCCCGATcaagtaaaattgttattaagaaaggGTCAAATTCCTGATGCTGCATTAATTCATGCGGCTAGAAAACGTAGACAACAAGCTCGTGATTTGGGAGAAGATTTTATACCAATATCATCGCAATCGcaaagTGAATCCAATGCTGACAATGAGCAAGTTTCTGGTCGACGCTTAACTCGAGAAGAAGATGAATTAGAAGATAGCGATGATGATGGTATAATTGTTATGTCTGGAATTGTGAGTCAAGCTGAGGATCGAAAAAAAAGCTTACATACTACTATGACTGacCGTACCAATAACAATAGTGATTTTGAAGATCCTGATGAACTTGATGAAGATAATGATTGGGAAACTCAACAGATAAGAAAAGCAGTAACTGGATCACAGTTAGCTGCAGCGCAACAGGAATCTGCTGGCTTGACtgcattgtacaataatatggcTACTCATTCTATGGTTATGCAAGAGCAACCTATTGCACAAACAATGATAAATCAGAGACCTCGATTCCCTGACTCCTATGTTCCTCAAGGATTGATGACTTCATTAAACCCCAATGAAATCATCAATAAAACCAGGGAAatattaaATGAGTTAAAAGAAAAGCGGATTCctgatcaaaaatattttgaagatatgACTGATGAAATACCAGAAATCAAGAATAGAATTGAagtgctaaaaaaaaatgttccagaGTTGGCTGAATGTTTTCAGTTTTATCAAGATTTGCGTGGGTACGTCACTGATCTGGTAGAATGTCTTGATGAAAAGATACCTGTACTTGTGGGATTGGAACAACGTCTATCTAAGTTGTATGAAAAAAGACGTACTGATCTAACCGCAAGACGTAGACAAGATGTTAGAGATCAAGCAGATGAAGCTGCATCTAATAACAaATTGGGAACATCTTCAACTACTCATTCAAGATCTGAAGAACAGCAAAGAAGAGCTGCAGAACGTGAAGGTCGTCGTATAAGACGTATGAGAACAAGAGAAATAAAAGCGATAAGTAAACACGCTGATGGCATGTctagcgatgaagaagttcctGAAACAGATGCATCAGCATTTAGGTCTCAACTAGAGGTCATAAAAAGTGATTCTAATCTGTTATTGGATGATGTTCTCGAAGAATTTGCATCAGTTGATTTGGTTTTAAAACATATGTTGGAATGGAAAAACAAATACCTAGAAAGCTATGTAGAAGCATATGTCAATGTGTGTTTACCAAAATTAATTGGGCCTTATGTTCGCATTGAAATGCTGATGTGGAATCCATTGGAAgatGATCTAGATATGGAGAATATGTTTTGGTATAAAagtgttcaaaaatatacattaaaggGAATGAATAATATAGATCAACTGTCAAAAGATGTGGATTTAGAATTAATAcccaaaataatagaaaaagttGTGCTCAATAAAATTGATCAAATGATTACAAGTCAATGGGATCCTCTTTCGTTTACGCAGACAAAACACATATCTAATGTTATGATGAATATACTGGAAAAATATCCAACTATTGATCCAgacagtaaattattaatgtcattgtTAACTAATATAGTGGATAGGATCCGAGACGCAGTAGATTTTGATGTATTTATTCCCATTTCTTCTAGACAAGTAATGAATACTGGTCGtatgaatgtattttttcaaagaCAATTTAACACAGTTGTAAAACTGTTTGGCAACATTCTTTGTTGGCATCAAATTATTGAAGATGCAGTATTGATAGATTTAGCCATCAATCAAATACTTAACAGATACTTACTAACATCTATTCGTACGCTACAACCATTAGAAgctattttgaaaattactatgATTGCTCGAATGTTACCTAGTGTATGGTCATGTTATGGAAGTACTACACCTAAAGAATTAACATCATTTTTCAACCAGTCAAAATTAGCAGTAATGGAAATAGATAAATCACAACCCCAGGCAaaACATGCCCTGGACAAACTAAACGAAGTATTGAAACTGTGA
Protein Sequence
MAMQFKKPKRNLRVRDTDGLYDNENEEQTDVDAVLKLSKSHKEKILKKINTLSFGDELNECDDGEEFKVKKSSYSKKIKKQMNKEKMGRDKIENGKKSKIINDTKRPIKEKQTNVNSQPVEKEIMLTGRAAEMAGYESSDEEPDSYNSSSHRFSNPDQVKLLLRKGQIPDAALIHAARKRRQQARDLGEDFIPISSQSQSESNADNEQVSGRRLTREEDELEDSDDDGIIVMSGIVSQAEDRKKSLHTTMTDRTNNNSDFEDPDELDEDNDWETQQIRKAVTGSQLAAAQQESAGLTALYNNMATHSMVMQEQPIAQTMINQRPRFPDSYVPQGLMTSLNPNEIINKTREILNELKEKRIPDQKYFEDMTDEIPEIKNRIEVLKKNVPELAECFQFYQDLRGYVTDLVECLDEKIPVLVGLEQRLSKLYEKRRTDLTARRRQDVRDQADEAASNNKLGTSSTTHSRSEEQQRRAAEREGRRIRRMRTREIKAISKHADGMSSDEEVPETDASAFRSQLEVIKSDSNLLLDDVLEEFASVDLVLKHMLEWKNKYLESYVEAYVNVCLPKLIGPYVRIEMLMWNPLEDDLDMENMFWYKSVQKYTLKGMNNIDQLSKDVDLELIPKIIEKVVLNKIDQMITSQWDPLSFTQTKHISNVMMNILEKYPTIDPDSKLLMSLLTNIVDRIRDAVDFDVFIPISSRQVMNTGRMNVFFQRQFNTVVKLFGNILCWHQIIEDAVLIDLAINQILNRYLLTSIRTLQPLEAILKITMIARMLPSVWSCYGSTTPKELTSFFNQSKLAVMEIDKSQPQAKHALDKLNEVLKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01499641;
90% Identity
iTF_01347101;
80% Identity
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