Basic Information

Insect: Perdita meconis
Gene Symbol: -
Assembly: GCA_030770465.2
Location: JASKOS020000009.1:11591745-11599174[+]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.6e-15 4.5e-11 43.3 0.2 9 70 257 316 251 320 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.6e-15	4.5e-11	43.3	0.2	9	70	257	316	251	320	0.88

Sequence Information

Coding Sequence: ATGGACGGGGCCAGCGTGAATGGCGGGAACGCCGACGAGGCGCACGATACTCCTAACCTCGAAACTACATCGAGTATGCTGGATTCGGAGGAGGCGCAAACGAAAGAGGAGACGACCGTCGATATGGACGGCCAGGAGGTAAACGGCGACGTAAAAGAACCGCCGAAGAAAGCCGCCACGCCGGTCGTTAGACGAAAGTTGCGTAAGTTCAAGGCTAATTCGACTAGTACCATTGAAAATGATACGGACACAAGAGGACATAAACGTAAGCTTTCGGAACCTGATGATCTTAGCTCCGAAGAATCTGTGGAGTTTAACGGATTCGACGTGCAAAGGAATAACGATTGTGAGCCGGGAAGCCAAGTCCTGAAGAAGCTCATTGCTGAAGCTGAGATAGCAGAAGCACAAATGGCAAAACGATTTAGACATAGTGTAAAGAAGAATTTCGATGGAAGGAAGGATGATGAACAAGATTCGGACGACAATAGAACACATAATTACGAATCGGAGCACGGGTTAGACATAGAGAAGAtaaagaaggaaagagaatCTGATAAATCTGAAACGGACTCGGTCGGCGTATCGAACGCTATGGAGTCTGAAATAGAAACTCAAAAAACGGAGGAGACGTCATTGAAATCGACGAACTCGTCGGCGGCTAGTAGTCCTGCAGGGCATCAGAGAGCGAAGGGCCGCGCGATGCGTGGGACGAGTCCTGCAACGACGCCGaagcaaaaaattgttgacaTGACAAACCCTGCGTACAAGGAACCATTTAAGTATGGCTGGAAACGCGAATTAGTTTTTAGAGCGAGTAGTGATTCGAGTCTGAAACGGATGGCcgatatatattattatacaccAAAGGGCAAGAAAGTTAGAAGTTTTAGAGAAGTTGCAGAATTTCTTAACACAAAAGAGTTAACTATcgataattttacatttttcaaagaacCAATTGGTATCAATGATCCTGAGAAGGAAATTATTCGTGATGCTAAAAGAATGAGGGGATCAATAGCTACTCCACCCAGAAGGAGTTTCGGATATAAGAAGTCCACACCTGTAAGAAGGGTTGTAGAAGCAGCACCTGCTCCAACGCCTGTACCTGTGCCTGTGAAAACTGTTTCCAAGTCACCGAAAGGAGCATCAGCAGGATTTAAAGTCAAAGTGCCTGGAAAGAAAACTCCTCAAATAAaaataaaagctGAGGAAAGTGAGATGCTTCCGCCCCAACGGACGACGAGCACAAGAAGAAGTCAGCAGCTACCTGTAGAAAAACCGCCGCctccaaaaacaaaaagaCAAGTAACGCCCAAAGTTCAAGAACCGTGCAGTATAAGGTGCTCAACAAGTATGGGATTGATACCAAGCTTACAATGTCGCGTGTGTCTGTGTTTATATCATCCTGAATGTGTTGATGGCATGGAATTTGCAGGAAGCGATGAGTATGTTTGCAAGAATTGTCAGAAGGACGTTAGTGAATCTCAGCCTCAAGTTAATCCGTCTCTGACGCCTCCTCCGTTAATACCAATTAGCATGCTAGGCGCGCAGAATGCGAAAACGAAACACCAAGTCAGTCTAACTCCACCGAAACTGCAAAGAATCCCCAAATCCGAGAACACGGATTCCCAGTCGCGAAGCGCAACGAAAGCTTCGAAAACGCCGACCGCGACGTCGTATCCCGTTTCGAACGCGGACAAAAAGGAAAGCGATTGGTTCGCGCAGGCAGAGAACGAATTTTTACAAAGTCACGACGGAAGTTTGCCGAAGCCGGCGCAAAATATCGCTTTGATGGGTGGCAAAAGATACATCGTTGTGCCGAAAAATAACGCGATGGCTGTACAGCCGGCCATAACAGTGAAACCGGATAAAATCGGCGACAAACCGCCGATACTTCAGGACGGTTCGCTGACCGATATATCGAACACCATGGAGAACTCTATGACAACGAAGTCGCATATGTCTTTGTCGACGTCGTTGGGAAGAGACGCTCTCGATAAATTGGCCGACAAAGACGCGTCGGTCACGGAACTGGCTCCGTGTTCTGGGACGGAAGAAATCGAAGAGGCGTGCAATCGTAGAAACCAAATGGACGTTTTGTCGATGAACAGGCTGGAGAATGATTTGTTAGACGCAGAGACTGATGAAACAGCCGAAAGTAAGAGATCGATGAGCTGTATGTCGCCCGAGGGAATGGCTGCGGCGAATAACACGAGCATTAGTACAAATAACGATCTACTTAAAGTAGATTCGCGGCAGTCCGTGCCGAGTAGTTTGGGTACTATTAAAATAAGTAGCAAAAGGAAAGCAAGCCACCAAGAAATAGAGCAACAGCAACATTTCATGGACTCGGTCTGTGCCGGTTATCACGCATTGCTTCGTATTTTCCAATACCTAAAGGTTCAAGAATTGCTACGAGCCGCCAGAGTGTGCAAAATGTGGCGGGACTTGGCCGCGCATCCGTCTTTGTGGAAAACCGTGCGGATGAAGAACAGTCAAGTGACGGATTGGGACGGTTTGGCCGACACGCTGCAAAGACGCGGCACACAGCACTTGGATCTGCGGAAAATGTTGGTTGCGGGAGAGTCGGACAGCATTTGGAAAAAGTTCTTGACGGTGATACCGCGTGTGACGAGCCTGGTGAAGCTCGAGCTCTGCCGATGCCCCGTGATGGTCGTCGAAGAAGTGATCAAAAGCTGTCCTCAGCTGGAAGTACTGAGTGCAATGTCGATAAAATGCGATTCCCTGAACCTTGAGTCCGTTGGAAATCTCAAGCGTTGTCAGGAGCTCAGACTTAAAGCGATCAGCGGAATGTCTTTGCAAACGGATCTCACACCTTTACAGGAATTAACGCAATTAACGCAATTAAGTTTAACGTCGGTGAAGGAACTCGGCAAGAAGAAGATCGATATTATACAAACATTAGTAAACTTGGAGACGTTGGAATTGGGAGAGTGCTCCGATTTCCCAGACAAATTTGGCACCACGGTTTTGATCAAGCTGCAGAAATTGGAACGCCTCAGGCTCGAGAAAGGTCAAGGGTCGTGCTGCACGTTCGATATTCTGGAAGGTGTGTCGAAGTTGCAGAGTTTGAGTCAAATGGAGTTGGTCAATTTCGACGTGAAGAACGGATTCGACAAATGTCTGGCGAACTGCAAAAATATCAAACGGTTGTTAATCATACCAACTTACATATCCCAGTCTGCGACGTCCAACAATATGGTGCTCGGAGGTGTTACGGAACTGTCGAATAATTTAACGCACTTTGTGTGGGGCGTTACCCTTGAATTGCTCAGGGTTACAGAACTGTTTGTTGATCAGTGTAATCTAATGAGCAAACAGGTTACCGGTGATTCGATACCAGTTTTAAAGCCAGTACCTTGCTTGAAGTTAATCGAAGACGTCGAGGATGAGAACGACAATCAGaaagGCGACGATAAACAGCAACCAAATCTAACGAATCCTCAAGTGGACATATTACCGTTGCCGCAActtcagaaacttttattaactGCATTGCCGAAAACCAGAGTTAAAATCTTGAAGATTCCTTTCCACGCTACATGGCGGCAAAGCATTTCGGATACTGCTACGCAAtag
Protein Sequence: MDGASVNGGNADEAHDTPNLETTSSMLDSEEAQTKEETTVDMDGQEVNGDVKEPPKKAATPVVRRKLRKFKANSTSTIENDTDTRGHKRKLSEPDDLSSEESVEFNGFDVQRNNDCEPGSQVLKKLIAEAEIAEAQMAKRFRHSVKKNFDGRKDDEQDSDDNRTHNYESEHGLDIEKIKKERESDKSETDSVGVSNAMESEIETQKTEETSLKSTNSSAASSPAGHQRAKGRAMRGTSPATTPKQKIVDMTNPAYKEPFKYGWKRELVFRASSDSSLKRMADIYYYTPKGKKVRSFREVAEFLNTKELTIDNFTFFKEPIGINDPEKEIIRDAKRMRGSIATPPRRSFGYKKSTPVRRVVEAAPAPTPVPVPVKTVSKSPKGASAGFKVKVPGKKTPQIKIKAEESEMLPPQRTTSTRRSQQLPVEKPPPPKTKRQVTPKVQEPCSIRCSTSMGLIPSLQCRVCLCLYHPECVDGMEFAGSDEYVCKNCQKDVSESQPQVNPSLTPPPLIPISMLGAQNAKTKHQVSLTPPKLQRIPKSENTDSQSRSATKASKTPTATSYPVSNADKKESDWFAQAENEFLQSHDGSLPKPAQNIALMGGKRYIVVPKNNAMAVQPAITVKPDKIGDKPPILQDGSLTDISNTMENSMTTKSHMSLSTSLGRDALDKLADKDASVTELAPCSGTEEIEEACNRRNQMDVLSMNRLENDLLDAETDETAESKRSMSCMSPEGMAAANNTSISTNNDLLKVDSRQSVPSSLGTIKISSKRKASHQEIEQQQHFMDSVCAGYHALLRIFQYLKVQELLRAARVCKMWRDLAAHPSLWKTVRMKNSQVTDWDGLADTLQRRGTQHLDLRKMLVAGESDSIWKKFLTVIPRVTSLVKLELCRCPVMVVEEVIKSCPQLEVLSAMSIKCDSLNLESVGNLKRCQELRLKAISGMSLQTDLTPLQELTQLTQLSLTSVKELGKKKIDIIQTLVNLETLELGECSDFPDKFGTTVLIKLQKLERLRLEKGQGSCCTFDILEGVSKLQSLSQMELVNFDVKNGFDKCLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSNNLTHFVWGVTLELLRVTELFVDQCNLMSKQVTGDSIPVLKPVPCLKLIEDVEDENDNQKGDDKQQPNLTNPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSISDTATQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01065571;
90% Identity: -
80% Identity: -