Pmec007771.1
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- -
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000003.1:17071243-17089058[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-12 3e-09 37.6 0.0 1 39 402 441 402 445 0.90 2 4 3.2e-12 9.3e-09 36.0 0.1 2 39 457 494 456 497 0.94 3 4 1.2e-18 3.4e-15 56.6 0.0 2 45 512 556 511 556 0.97 4 4 1.3e-18 3.9e-15 56.4 0.1 1 42 563 605 563 606 0.97
Sequence Information
- Coding Sequence
- ATGTTACCGTTCTTTGTGGCCGTTGGCAACGGCTTCGGAGTTGACCGGGTGTCTGGGCGCTTTAAGGTTAAGATCACAGCGAAGGAGGGCGGCGTGTGGGGGTGGCGGACGTGTTCCCAGCCGAAGGGAGGACGTCTCGAGTCGTTTGCGTCTCGCGGGTCGACGCACCCTGCCGATGAATCGTCGCGCGCGCCGAAACTGGATCGCGAAACTGATTTTAGACCGAGCCCGCGGCCAGACGGTAACTGCAACTTGAAACTGTATCCGTCGACGTGGAGCGCGCGGGGCGCGAGGGGAGAGGGAGGAAAGGACGACGAGATTTTACCCGAAATATGCAAATCCGTCCGTCCTCCCTTCTTTATTCCTCTCCAGGAGGAGTCCCTGCTGAAAACCGCCGATCAGCTGAAGATCAAAGGGCTCTGCGAGGTGCCGGAGAGTCGGGACGGTCCATCGTCGGTGAGCCTGAGCTCGCCGTCGCGCGAGCCTGGCACGCCTAGGATAAACTTCGCGAAGCTGAAACGGCACCATCCGCGGTACAAGAGGGCCAGAACCACGTTCGAGCCTCGCGCCACCGACTCGAGGCACTACGACCGATACAAAGAGGAGGAATCGAACGAGAATTACAATCGGGAGAACAAAGAGAACCACAGGGACTGGCAGGCCGAAGATGAGGATTGCGCGGAGGGGACCACGGCAGCAGTAGTTTTGGAAACTTGCCAGCgcaacaacaacaataataacaacaacaaCGGTAACGGGACGAACAACAATAACAACGGCGACATGTTCTGCCACACAGGGCTCGGCCATTATGGCCATCATCCGGATCCTGGAGAAGTCGACCTACCTCCAGAGACTCAACCCACACCGCCGAGCGCAACGTTAGTGGGCACTACGATCACCCATCTGAGAGATTCGGATCATCACTCTACAGAGATTCAGAACTGCGACACCGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCGGACCAGGCGAGCGTCAACTCGAAGCACCACGCGGACAGCGACAACATGATGATGATTACGCCGGAGCTGCTCGGTCTGATGCCCTCTGGAAGCTCCGTTCACTCCGATTCCGGCGAGAACAACTCGAGGGGACACTCGGGACAGTCCAGTTCCCATCACCATGGCTCCAAGTCCTGGACCCAGGAGGACATGGACGCGGCGCTCGAAGCTTTGAGGAACCACGACATGAGTCTCACAAAAGCCTCCGCAACTTTTGGCATCCCCTCGACGACACTGTGGCAAAGGGCGCACCGGCTAGGCATAGACACACCGAAGAAGGACGGACCAACGAAGTCGTGGAGCGACGAGAGTTTGAACAACGCTTTGGAAGCGTTGAGAACCGGGACGATCTCGGCGAACAAGGCTTCGAAGGCGTTCGGTATACCTTCCAGCACGTTGTACAAGATCGCCAGGAGAGAAGGGATCAGGTTAGCGGCACCCTTCAACGCGAGTCCCACCACCTGGTCACCTGCCGATCTGGATCGTGCTTTGGAAGCGATAAGGTCTGGTCAAACGTCCGTGCAAAGGGCCTCGACGGAATTTGGTATACCTACGGGAACGTTGTACGGTAGATGCAAGAGAGAAGGGATTGAGTTGAGCAGGAGTAATCCTACACCTTGGAGCGAGGACGCGATGACCGAGGCTCTTGAGGCTGTCAGATTAGGGCACATGAGTATCAATCAAGCGGCTATTCACTACAATCTACCCTACTCGTCGTTGTACGGCCGTTTCAAGAGGGGGAAATACGAAGAACCCGCCGTCGGCGTCGTCGACATATCCCAAGACGGAAGCAGTCCGCATTTCCATCAAAGTCCCAGTCAGAACCACTCGACCGTCGTTCCAGATCAAATGCCTTACCAAGGCAGCTGA
- Protein Sequence
- MLPFFVAVGNGFGVDRVSGRFKVKITAKEGGVWGWRTCSQPKGGRLESFASRGSTHPADESSRAPKLDRETDFRPSPRPDGNCNLKLYPSTWSARGARGEGGKDDEILPEICKSVRPPFFIPLQEESLLKTADQLKIKGLCEVPESRDGPSSVSLSSPSREPGTPRINFAKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEESNENYNRENKENHRDWQAEDEDCAEGTTAAVVLETCQRNNNNNNNNNGNGTNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTEIQNCDTVKIKFETLHTMDSSDTIDIDSHMSDQASVNSKHHADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGVVDISQDGSSPHFHQSPSQNHSTVVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -