Pmus010520.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829108.1:2627762-2642439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5 1.8e+02 3.5 0.4 2 23 6 27 5 27 0.96 2 13 0.025 1.9 9.8 0.4 1 23 1041 1064 1041 1064 0.92 3 13 0.00012 0.0093 17.0 2.0 2 23 1185 1206 1184 1206 0.96 4 13 0.00014 0.011 16.8 3.1 1 23 1212 1234 1212 1234 0.98 5 13 0.0047 0.35 12.1 2.6 2 23 1241 1262 1240 1263 0.94 6 13 1 75 4.7 0.4 6 23 1277 1294 1274 1294 0.98 7 13 0.0042 0.31 12.2 3.7 3 23 1301 1322 1300 1322 0.97 8 13 0.13 9.8 7.5 0.4 2 23 1339 1359 1338 1359 0.96 9 13 7.1e-05 0.0053 17.8 0.8 1 20 1365 1384 1365 1387 0.91 10 13 0.0071 0.53 11.5 0.5 1 23 1395 1417 1395 1417 0.98 11 13 0.0064 0.48 11.6 7.2 1 23 1423 1445 1423 1445 0.98 12 13 1e-05 0.00076 20.4 1.4 1 23 1451 1475 1451 1475 0.97 13 13 0.0012 0.087 13.9 5.1 1 23 1481 1503 1481 1504 0.95
Sequence Information
- Coding Sequence
- ATGGATCCGCTCGTGCAGTGTCCTGTGTGCACCCTATTTCTCCATAATGGAATGACCCTGGAGTCACATTTGGACACACATCCTAAAGACCAAGTTATAAAAGCATTGTGCAATCTGACTACTAAAGCTCCCAGTTATGGAAGCCGGACTACCACTCCATTACATTCAGAACGGTCATATAGAAGTAGGTCACGAACACCTGCAGCCGAAGATAGCAGATGGAATGGATCCCATAGAAGTGATGATCGTTACTGGCGAAGAACACCTAGTAGAACTCCTAAAAGCAATTCTACCTCGAGTTCAACAAGAAATGGATCATCTGATGTGCGAATGAGtgatataaattttgaaaacaatTGTAGTTCTGTTAGTGCCAGTCAACTTTCAGGTGCTCCATTTATAATGAAGGCTGATAAAATTCAGCAAACATACCAATCTCCTCCCATATCAGAATTTGACCCACAGTACATTTACTATGACCAGCAAGAGGACAGAGAAATTAAATATTCCCGTAGCGCTGAATACAATTCAATTAGTAGTCCTAATAGCATGTTCGCTTACAATAATGTGGTGCCAACTGTGGGTCCAGGAGTTAAATTGGTACCCGCCGTGCCTAAAAGGGGCAATGACCTCACAAAAATTTTACCCAAACCAAATAACAACATACTTCTTAAAAATATGGGCGGTGTGCAATATGTCAGTCCAGGAACCAAGCCTATACATATGGTGGTGCCTAGTGCATCAACAATTGTGCagaaaaatgtacaaaacaaTATGATTATGACAGGTAATGTGCCTAATCTACAAATTCAGTTAGACAGTAAAAGAGGAGCGCCTCCAGCAACCAACAACCAGATACACCATATTACTTCTAGTGGTTTCACACCAGGCACTACCGTTGTTACTCAGAATTCTCAAATAATTTATCGGGAAATGGTGAACAATGTTGATGGTAAGCCCTATGTTTCTAGTATGCCTTCAGTGGTGAGCGCTCATGATAATGTCACAAATTTAGCTCAAACCAGTTCATTGTACCAAAATGTAATGGTAGTTGATCAATTTGGAAATGCCTCATGTGTATATGCAACACCCCAACAAATAATGCCTAAATGCCCGACTACCGTTTACAATGAAACTCTATCATCTAGGCAAACTCCAACTTTACCAACTAGGTTGACTCCAACTTTGGCACATAGACACACTCCAACTTTGCCACATAGGCAAACACCAACTTTACCGCATAGACAAACACCAACTTTGCCTATGCATGAAAACAAATCTCCTCAAAGTGTAAATGACCCCAAAACACTTATAATTGAGGTTGGGCCTATTGCTCCTTCAGTGTCAGAAAGTATGTCCGAGTCTACCAGCCCCAGTAGATCACCATCAAATTCAAATAGTTCAGTTGAAAAGTCTGAGAAACAACCTGAGAATGTTGATTCAAAGAGTGAAACACAGGGAGTTACTAAAGGTCTGAAAATTCTTAGTAACATAAAAGTTGAAGTGCCAGTTCAGCATCATAAAAATATGGTAAACACTGTCATGGATCTCACAGGCCCTAATGATTCGGAGTACCGTGTGGAACTTGTACCATCACCTGAAAAGATATTGCCTGATTTGGATGATactgataatgataatattgtGATAACTGATGATAGCATACATTTAATGTCTGATGATAGCATACACCCATCAAACTCTAGTGCAGATTCCACATTTGCTGTGATAAAGCGTAAGTCTTCCCCAAAAGAATTAGACAAAAATATTGATGATAACAAAATCGATACTGAGTTTTCTGACAGCTTTCCAGTTCCAGATTTAATATGTAATGAGAAACCGTCTATATCACCTTGTAGTGAATTGTCAGAAAATGGTGATAACTCAACCGATCAAACCTCAATATCTCCTAAACCTGCAATTAGTCAAGTTAGCcataataaattagaaaacaCAGATAAGAAAATTCAACTTTCACAGAAGCCATTTAGGCACAATCCCTTAAGACTGAACaatatttatgtgaaaaaaaGCAAAAAGATTTTACAGATAAAGAATGCAAAAACCTGTACTACAAGCAAATTTTCTAAAACATTAGCAACTGTAGCATCTTCGTCTAAAAAGGCTCCAGAAAATTTTACCATGAATAAATTGCATACACCAGATAAAAGTGAAATCAAAGAAAAATCTAGTGTGCTGCAAACAATATCAGTGGAGGAGATcaaagagaatgatgataataatgagtTTGACGCTGACATAGAGGAACAGTCCATGGATATTGAACCGGTAGCACCTTCTAGTATGGATGAACCCCCTCAGTTCACTGCAACTGTCGAGTTACAATGTGTACATGTTAAAGAGGAAATAAACACAAGTAATGAAGGGGGATTTAGTAATCACACAGCAACATCGGACCGCGAACTTGCACCAATGGAAACACTGCGCCCAATTAATGTGGTTTCTTATGCCAATATGTCGGGTGATTTTGAAGACGATTCAAATGACAGAGAGTTGCTCGACCTTGAAACAGCATCCAAGAACAAACAGTTTGTCAATATGatgaatgaaaattatttcGGTGATAATATCTACGCGGACTACTTTACGCCGGATCGTGTCGAGACCTTCGAAGCAGAGAGAGAAGCAGCAGGGTACAAGGAGGGGACTAAAGATGGTATGTATAACATTTGGGGTGAGCCATCTCAAAAggagaatgaaaatgaatttgtTCTACCTAATTTTATACATGAGAGTTACAAAATAGCTGAGAGTAGTGGAATAGATTATTCTGAAATGGGTGCGGAGGAACAGGGTGATGTCGAAGGCGAGCCTGATAGCAAAGTGGATGTGTTGAGCGAAGGTCGCAGCGAGAGCGAAGCGCCGCTGAACATTTGCGCGGACGAGCGCATGCCGCCGCGGGGTGAACTCAGTGGTCAGGAAAGCAATGGAGACATGGAGTCGCCTTGGGGTGGGATGTATACGGACGTGCCGCCGACGGAGCCGTACGACCTGATCGCGAGAGAGAGCTGGGTCTCGGATGGGTCCGACATCGACGTCGGCGAAAAGAGGGAAACGCTAGTGGAAGAGCTCCAGTTCCCCAAGTCTCTGTCCCGCGTGTACACCTGCAGGTCGTGCGGGATGAAGACGACCTCGCTGAAGGAGCTGCGCGCTCACAAGGCACTGGTACACGGCCTGCCAGTACTGCCCACGTGTTCTGTTGCCTCACACGTGCCGAAGCGGACCAAACACGCCTCCCATACGTACAGCCGCCTCGTCACAGATAGGAAGATTAAGAAGGAAGAGAAATCGACTGATTCGGAGATTCTGTCTGGCAATCTCTTAGCGATAGACAAGAAAGAACCCATTACACCAACAATTCCAATCCTCCAAGTGTACGATACTTTGGAGGAAGCGAAACCCAAGATCGAAGGGTTGATCAAGATTAAACAAGAGCCTAAACGGAGACGGAAGGACTTCGTGTGCCCCACTTGTAAAGTGGACCAGGGTAGTGACAAGGCGTTTAACGCTCACCTCAAGATACACCCACTAGAGTGTCTCACCTGCGGGAAATGTTTCTTTAGAAGAGCTAACATGGCGTTGCATATGAAAATGCATTTAGGAATTAGGAATTACAAATGCGAAGTGTGCGAAAAGCGGTTTATAACTCGCCAGAAGTTGAAGGAACACCACAACGTGCACACCGGTCGGCAGCCCATCAAGTGCACCATCTGCGACGACACCTTCCGAAGATACTCCAACATGGTGCAGCATAGGGACCGCCACCACCTGCAGAAGCGCGCCAAGGTGCGCGACTTCGTGTGCCCGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTGCTGTGGCACAAGGAGACGCACGACGACAAGCCCAAGGCCTGCCACTACTGCAGCGACAAGTTCGTGCACGCCAGCTCGCTCACGCGCCACGTGCGCCGCTCGCACAACGCCTACTTCCTGTCCGACCGCCTCAAGCCCAAGGGCGAGAACGTGTCCTGCCCCGTCTGCAAGCAGgtGTGCCTGCGCGCCAACCTGCGCGCGCACCTGGGCACGCACAGCGGCGCGCGGCCGTTCCCGTGCGTGGTGTGCAACAAGTCGTTCACCACCAAGTGGAACCTCAAGCTGCACCGCTGGACGCACATGTCGCGCTCCGCCAAGCCCTACAAGTGCTCGCTGTGCGCCGGCGCCTTCGTGCGCCACTCCGAGTTCGTGTCGCACATGAACGCGCACAAGTGCGTGCGCCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGGCACGTGCGCGAGCACGAGATGGCCAAGAAGTTCGTGTGCAAGGTGCCCGAGTGCGGTAAGTCCTTCCACCGGAGCTACTACCTCTCCGAGCACATGAAGGTGCACAGCGGCGCGCGCCCCTTCTCCTGCAACATCTGCGGGAAGACCTCCAGCAACAAGTCCAACCACAACAAGCATGTCAAGATTCACCATGCGCGGGAGCCCGTCGCCACCGAGGCGTAA
- Protein Sequence
- MDPLVQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCNLTTKAPSYGSRTTTPLHSERSYRSRSRTPAAEDSRWNGSHRSDDRYWRRTPSRTPKSNSTSSSTRNGSSDVRMSDINFENNCSSVSASQLSGAPFIMKADKIQQTYQSPPISEFDPQYIYYDQQEDREIKYSRSAEYNSISSPNSMFAYNNVVPTVGPGVKLVPAVPKRGNDLTKILPKPNNNILLKNMGGVQYVSPGTKPIHMVVPSASTIVQKNVQNNMIMTGNVPNLQIQLDSKRGAPPATNNQIHHITSSGFTPGTTVVTQNSQIIYREMVNNVDGKPYVSSMPSVVSAHDNVTNLAQTSSLYQNVMVVDQFGNASCVYATPQQIMPKCPTTVYNETLSSRQTPTLPTRLTPTLAHRHTPTLPHRQTPTLPHRQTPTLPMHENKSPQSVNDPKTLIIEVGPIAPSVSESMSESTSPSRSPSNSNSSVEKSEKQPENVDSKSETQGVTKGLKILSNIKVEVPVQHHKNMVNTVMDLTGPNDSEYRVELVPSPEKILPDLDDTDNDNIVITDDSIHLMSDDSIHPSNSSADSTFAVIKRKSSPKELDKNIDDNKIDTEFSDSFPVPDLICNEKPSISPCSELSENGDNSTDQTSISPKPAISQVSHNKLENTDKKIQLSQKPFRHNPLRLNNIYVKKSKKILQIKNAKTCTTSKFSKTLATVASSSKKAPENFTMNKLHTPDKSEIKEKSSVLQTISVEEIKENDDNNEFDADIEEQSMDIEPVAPSSMDEPPQFTATVELQCVHVKEEINTSNEGGFSNHTATSDRELAPMETLRPINVVSYANMSGDFEDDSNDRELLDLETASKNKQFVNMMNENYFGDNIYADYFTPDRVETFEAEREAAGYKEGTKDGMYNIWGEPSQKENENEFVLPNFIHESYKIAESSGIDYSEMGAEEQGDVEGEPDSKVDVLSEGRSESEAPLNICADERMPPRGELSGQESNGDMESPWGGMYTDVPPTEPYDLIARESWVSDGSDIDVGEKRETLVEELQFPKSLSRVYTCRSCGMKTTSLKELRAHKALVHGLPVLPTCSVASHVPKRTKHASHTYSRLVTDRKIKKEEKSTDSEILSGNLLAIDKKEPITPTIPILQVYDTLEEAKPKIEGLIKIKQEPKRRRKDFVCPTCKVDQGSDKAFNAHLKIHPLECLTCGKCFFRRANMALHMKMHLGIRNYKCEVCEKRFITRQKLKEHHNVHTGRQPIKCTICDDTFRRYSNMVQHRDRHHLQKRAKVRDFVCPCGAVFHSRAKLLWHKETHDDKPKACHYCSDKFVHASSLTRHVRRSHNAYFLSDRLKPKGENVSCPVCKQVCLRANLRAHLGTHSGARPFPCVVCNKSFTTKWNLKLHRWTHMSRSAKPYKCSLCAGAFVRHSEFVSHMNAHKCVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKFVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909172;
- 90% Identity
- iTF_00636846;
- 80% Identity
- -