Basic Information

Insect: Pelosia muscerda
Gene Symbol: -
Assembly: GCA_963691645.1
Location: OY829124.1:8688159-8691489[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0047 0.35 12.0 0.7 1 21 68 88 68 89 0.96

2 16 0.01 0.77 11.0 0.4 2 23 161 182 160 182 0.97

3 16 0.012 0.88 10.8 0.1 1 23 186 208 186 208 0.95

4 16 0.19 14 7.0 0.1 1 10 213 222 213 236 0.84

5 16 0.0046 0.34 12.1 1.8 1 23 242 265 242 265 0.97

6 16 0.00039 0.029 15.4 1.2 1 23 272 295 272 295 0.98

7 16 4.7e-05 0.0035 18.3 0.9 3 23 304 324 302 324 0.97

8 16 3.7e-07 2.7e-05 25.0 2.5 1 23 330 352 330 352 0.98

9 16 0.065 4.9 8.4 0.4 1 23 428 451 428 451 0.96

10 16 0.11 8.3 7.7 0.1 2 23 478 499 477 499 0.96

11 16 0.33 25 6.2 1.1 1 23 521 543 521 543 0.97

12 16 5.7e-06 0.00042 21.2 0.9 1 23 547 569 547 569 0.98

13 16 0.21 16 6.8 0.1 1 23 574 597 574 597 0.94

14 16 4.7 3.5e+02 2.6 0.8 1 21 603 623 603 626 0.88

15 16 0.0051 0.38 11.9 2.5 1 23 633 656 633 656 0.96

16 16 0.00029 0.022 15.9 3.3 1 23 663 685 663 685 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0047	0.35	12.0	0.7	1	21	68	88	68	89	0.96
2	16	0.01	0.77	11.0	0.4	2	23	161	182	160	182	0.97
3	16	0.012	0.88	10.8	0.1	1	23	186	208	186	208	0.95
4	16	0.19	14	7.0	0.1	1	10	213	222	213	236	0.84
5	16	0.0046	0.34	12.1	1.8	1	23	242	265	242	265	0.97
6	16	0.00039	0.029	15.4	1.2	1	23	272	295	272	295	0.98
7	16	4.7e-05	0.0035	18.3	0.9	3	23	304	324	302	324	0.97
8	16	3.7e-07	2.7e-05	25.0	2.5	1	23	330	352	330	352	0.98
9	16	0.065	4.9	8.4	0.4	1	23	428	451	428	451	0.96
10	16	0.11	8.3	7.7	0.1	2	23	478	499	477	499	0.96
11	16	0.33	25	6.2	1.1	1	23	521	543	521	543	0.97
12	16	5.7e-06	0.00042	21.2	0.9	1	23	547	569	547	569	0.98
13	16	0.21	16	6.8	0.1	1	23	574	597	574	597	0.94
14	16	4.7	3.5e+02	2.6	0.8	1	21	603	623	603	626	0.88
15	16	0.0051	0.38	11.9	2.5	1	23	633	656	633	656	0.96
16	16	0.00029	0.022	15.9	3.3	1	23	663	685	663	685	0.97

Sequence Information

Coding Sequence: ATGAATTACCGCGATCATACCATaggAAAGCATGGACCCAGCAATGCAGTTGTAAAGTTAGAAGGTTCCCAACTAGAAAAGTTGTCCAAGCCGAAATATACGAGAAGTGCCAGAGCTGAGGCCAGAGTTATCACCAAGAAAAATGCCACTGCTATACTCGAATGCTGGTCCCTTTGCccatttagatggcagacaaacaGATTTAAATGTGCTTACTGCGAAGATAATTTCACCGACTGCTCTGAACTCAGAGACCACGTCAGAATATGTTCCACTCAACATACGTTCAATGATATTTACAGCAAATTTAAAGAAATGCCCTTAATTAATGTAGATGTTACAGAGGCTATTTGCTGTTATTGCTCCATGCCGATTACTGAAGTAGCCGACATGAGAAACCACGCTATTCAACACGGTTTTGAAATGGATCCAAACCACCCTGATGGTGTCCTACCATTCTCTTTAGACAAACAGTCCTGGAGATGTGTAATATGTTCGGAAAAATTCAACAACTTCTTAAAACTTTACGAGCATATGAATATTCATTATCAACATTACATTTGTGCTACTTGCGGGAAAGGATATATGACAGCGCCTAGATTGAGAAAGCACAGTGAAGTTCATATTTCCGGATCGTTCCCATGCAATGAATGTGGAAGAGTCTTCCTAATGAGGGCAGCAAGAGACTCACATAAACAGTCAGTACATGCTAAAGGTCCTAGATATGAATGCCCACATTGTAACATGCGTTTTGATGGATACTATAGTAGAATGGAGCATATGAAGAATGAACACAGCGAACAGGAAGTTTCTTACAAGTGTGCGCACTGTGACTTGTCTTTCAAAACTAGTGGAAAGCGAGCTATCCATGTCCGATCAGTACATTTTCCGCCTAAATTGAACTTTGGATGCATGTATTGTGAGTGGCAATTCAAAACGAATTATGAGTTAAAGAGACACATGGTGCGGCATACTGGAGAGAAGAACTTCCATTGCTCGATATGTGGAAAGTCCTTTCCGAGAAATAAGGCCTTAACTACACATTTGAAGACTCACCAGGATGTGAATTGTTCAGCTAATGTTTCGGAGGGGATAGGAGTTAGACGCGTTAGGAAGTTAAAGGAGAACGTTAGCGCACGGCAGCTGCGCAGGCGCCGAAGAGCGAACAACGAGCTCCCTGAAGAGTCAGAGAAAAGAATCTCAAAGACCATGATGCGGAGAAATGCTCTGATCCTTCTAGAATATTCCACAGCTTGGGCTTTTAGATGGTTCCATAGCGCGTTTTATTGCTGTTATTGTGAGGCAAAATTCGTTGATGTGCCTGTACTAAGAGCACATGTAAAAGTAAATCATCTACACGAAATgccaaataaaagaatattctcGAAATTAACTGAAAATAATATGGTTAAAGTTGATATTGCTGAACTCAGTTGTAGGTTGTGTAACAGAGTTCTAAACGGTATCGATTCTTTAAAGGACCACTTACTGATACACGGTAAAaccttaaatataaattacagtgATGGTGTCCTACCCTTCAAATTAGACGACGAAGGGTATACTTGCCAGATATGCTTTGCCCAGTTCCTAAGTTTTTCCAAAATGAACGAACATATGAACGAGCATTACCAAAATTATGTTTGCGACTCTTGTGGCAAGGCATTTGTTTCTAGATCACGGTTCCGGAAACACATCCAGTCTCATGAGAAAGGTAACTTCCCTTGCGGGGATTGTGATGAAGTTCTGGAAACGAGGGCAGCTAGAATGTATCATAGATTGAAAGTACATAAAAAAGGTGTGCGATATGCCTGCCCAAGATGTCTGGATGTCTTCACAACTTATCACACAAGAGCTAAACATTTAGTAGATTCACATGGGCAACAGAGAATGGAGTATTGTTGTAACGCTTGCGATAAATCCTTTGAAACAAGTTCGAAACGTGCTAGTCATGTACGTTTAACGCATGCTAATGTTGAAAAGAGACATTACTGTGTTCAATGTTCAGCGTTCTTCGTCACTAAATCTAAACTGCTGCGCCATTTGAGAACTCATAAATCAAAGTTTGATTAA
Protein Sequence: MNYRDHTIGKHGPSNAVVKLEGSQLEKLSKPKYTRSARAEARVITKKNATAILECWSLCPFRWQTNRFKCAYCEDNFTDCSELRDHVRICSTQHTFNDIYSKFKEMPLINVDVTEAICCYCSMPITEVADMRNHAIQHGFEMDPNHPDGVLPFSLDKQSWRCVICSEKFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHISGSFPCNECGRVFLMRAARDSHKQSVHAKGPRYECPHCNMRFDGYYSRMEHMKNEHSEQEVSYKCAHCDLSFKTSGKRAIHVRSVHFPPKLNFGCMYCEWQFKTNYELKRHMVRHTGEKNFHCSICGKSFPRNKALTTHLKTHQDVNCSANVSEGIGVRRVRKLKENVSARQLRRRRRANNELPEESEKRISKTMMRRNALILLEYSTAWAFRWFHSAFYCCYCEAKFVDVPVLRAHVKVNHLHEMPNKRIFSKLTENNMVKVDIAELSCRLCNRVLNGIDSLKDHLLIHGKTLNINYSDGVLPFKLDDEGYTCQICFAQFLSFSKMNEHMNEHYQNYVCDSCGKAFVSRSRFRKHIQSHEKGNFPCGDCDEVLETRAARMYHRLKVHKKGVRYACPRCLDVFTTYHTRAKHLVDSHGQQRMEYCCNACDKSFETSSKRASHVRLTHANVEKRHYCVQCSAFFVTKSKLLRHLRTHKSKFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00822216;
90% Identity: iTF_00637993;
80% Identity: -