Hpro035083.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypena proboscidalis
Gene Symbol
-
Assembly
GCA_905147285.1
Location
LR990155.1:3365548-3368166[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.054 5.6 8.7 1.2 1 21 60 80 60 81 0.96
2 16 0.042 4.3 9.1 0.2 2 23 153 174 152 174 0.97
3 16 0.013 1.3 10.7 0.1 1 23 178 200 178 200 0.95
4 16 0.078 8 8.3 0.1 1 23 205 228 205 228 0.80
5 16 0.0011 0.11 14.1 1.2 1 23 234 257 234 257 0.98
6 16 0.00056 0.057 15.0 1.6 1 23 264 287 264 287 0.97
7 16 2.6e-06 0.00026 22.4 1.3 1 23 294 316 294 316 0.97
8 16 4.7e-07 4.8e-05 24.7 2.4 1 23 322 344 322 344 0.98
9 16 0.0011 0.12 14.0 0.2 1 23 448 471 448 471 0.98
10 16 4.7 4.8e+02 2.7 0.2 2 23 498 519 497 519 0.91
11 16 0.25 26 6.6 0.6 1 23 541 563 541 563 0.98
12 16 1.2e-05 0.0013 20.2 1.0 1 23 567 589 567 589 0.98
13 16 9.2 9.4e+02 1.7 0.3 1 14 594 607 594 618 0.74
14 16 0.0092 0.95 11.2 0.7 1 21 623 643 623 646 0.89
15 16 0.0036 0.37 12.4 0.4 1 23 653 676 653 676 0.94
16 16 1.4e-05 0.0014 20.1 3.7 1 23 683 705 683 705 0.97

Sequence Information

Coding Sequence
ATGGgaCAACGAGGGCACTCCAACGAAGTCGTTAAATTAGAAGGTTACATAGAAAAGTTGACCAAGCCGAAATATACGAGAAGCGCTAGAGCCGAAGCCAGAATAATAACCAAGAAAAACGCGACCGCCATCTTGGAATGCTGGTCTTTGTGTCCGTTTAGGTGGAAAAAGAACAGATTCAAATGTTCTTACTGTGAGGATAACTTTACAGAATGTACAGAGCTTAGAGATCACGTCCGAATATGTTCCACGCAACACAGCACCAAAGACATATACAGCAAATTCAAAGAGATGCCGTTAATCAACGTTGATATAACTGACGCTATATGCTGCCTCTGTGCCATGCCCTTTACAGAGGTCCGTCAAATGAGAGAACACGTCATTCAGCACGGTTTAGACTTTGATCCGAATCACCCAGATGGTGTACTGCCATTCTGCTTAGATAAACAATCCTGGAGATGCGTTATATGCGCTGAAAAGTTCAATAACTTCTTGAAACTTTACGAGCACATGAATGTTCACTACCAACATTATATTTGCGCCACTTGCGGGAAAGGTTACATGACAGCGCCTCGATTGAGGAAGCATTCCGAAGTCCACATAACTGGGTCGTTCCCTTGTAACGAATGTGGCAGAATCTTCATCATGAGAGCTGCCAGAGACTCACATAAGGCGTCCGTTCACTCTAAAGGTCCAAGATATGAATGCCCACATTGCAACATGCGTTTTGACGGTTACAATAACAGAATGGAACATTTGAGAaccgctcacagcgaacgagaAGTATCCTACAATTGTTCTCATTGTGATATGTCGTTTAAGACTAGTGGAAAACGAGCTATCCACGTCCGTTCCATTCACTTCCCTCCTCAGTTGGATTTCGCCTGTAACTATTGTGAATGGCAGTTCAAAACAAATTACGAGCTAAAGAGGCATATGGTGAGGCACACAGGAGAAAAGAACTTCCATTGCTCGATCTGTGGCAAGTCTTTTCCGAGAAATAGGGCGTTAACGACTCATCTGAAGACCCATCAAGATATGAATTGCAAATGGCAGGGTGTTATCTATAAGCAAAAGGTTCAAAGGATCCCTCAGCTGAGGGGGCATCCAGATTTGACTGATTTAGTTCCTAGTTCCGCTAACGTTGCGGAGATAGGCGTTAGGCGAGTTAGGAAGTTAAAGGAGAACGTTAGCGCACGACAAATGCGCAGGCGCAGACGAGCGAACAATGAACTGCCAGAAGAATCTGAGAAAAGAATCTCTAAAACCATGATGAGAAGAAACGCTCTCATACTTCTAGAATGTTCCACGGCGTGGCCCTTTCGATGGTTCCATAGTTCCTTTTACTGTTCCTACTGTGAAGCTAAATTCGTCGATGTACCTCTCCTCAGAGCGCATGTCAAAACGAATCATCTAAATGAAGCACCGACCAAAAGAATATTCTCTAAACTTACAGAAAATAATATGGTTAAAGTTGACGTTACGGAACTCAGCTGTAGGTTATGTAGCCGACTCTTAAACGGCATTGATTCGCTAAAAGACCATTTGCTGATACACGGAAAAACTCTTAATGTAAATTACAGTGATGGGGTTCTCCCTTTCAAATTGGATGAGGACGGTTACACCTGCCAAATCTGTTTCGCCGAGTTTCTTACTTTCGCCAAAATGAACGAACACATGAACTCACATTATCAAAACTACGTCTGTGATTCGTGCGGCAAAGCTTTCGTCTCAAAGTCCAGATTTCGAAAACATGTACAATCTCATGAGATAGGATGCTTTCCGTGCGGAGATTGTGACGAAATTCTCGAAACCCGAGCAGCTAGGATGTGTCATAGGTTGAGGGTACATCGAAGAGGAATCCGATACGCTTGTCCACGGTGTCCAGAAGTTTTCAAAACATACCACAGTCGAGCCAAACATTTGGTTGATACACACGGACCACAAAGAAAGGAGTATTACTGCAATGCTTGTGATAAATCATTCGAAACAAGTTCCAAACGCGCCGGCCATATAAGTGTAACTCATGCCAATGTAGAGAAACGACATTACTGTCCACATTGCCCGTCAAGTTTTGTCACCAATTCGAAATTGCAAAGGCATTTAAAAATACACAGAATAGTTTGA
Protein Sequence
MGQRGHSNEVVKLEGYIEKLTKPKYTRSARAEARIITKKNATAILECWSLCPFRWKKNRFKCSYCEDNFTECTELRDHVRICSTQHSTKDIYSKFKEMPLINVDITDAICCLCAMPFTEVRQMREHVIQHGLDFDPNHPDGVLPFCLDKQSWRCVICAEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHITGSFPCNECGRIFIMRAARDSHKASVHSKGPRYECPHCNMRFDGYNNRMEHLRTAHSEREVSYNCSHCDMSFKTSGKRAIHVRSIHFPPQLDFACNYCEWQFKTNYELKRHMVRHTGEKNFHCSICGKSFPRNRALTTHLKTHQDMNCKWQGVIYKQKVQRIPQLRGHPDLTDLVPSSANVAEIGVRRVRKLKENVSARQMRRRRRANNELPEESEKRISKTMMRRNALILLECSTAWPFRWFHSSFYCSYCEAKFVDVPLLRAHVKTNHLNEAPTKRIFSKLTENNMVKVDVTELSCRLCSRLLNGIDSLKDHLLIHGKTLNVNYSDGVLPFKLDEDGYTCQICFAEFLTFAKMNEHMNSHYQNYVCDSCGKAFVSKSRFRKHVQSHEIGCFPCGDCDEILETRAARMCHRLRVHRRGIRYACPRCPEVFKTYHSRAKHLVDTHGPQRKEYYCNACDKSFETSSKRAGHISVTHANVEKRHYCPHCPSSFVTNSKLQRHLKIHRIV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01502340; iTF_00637993; iTF_01166968; iTF_00824081;
90% Identity
-
80% Identity
-