Pinf021175.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:21037673-21039988[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00036 2.1 9.9 0.2 26 46 53 73 45 77 0.88 2 9 0.0013 7.7 8.1 0.1 26 48 217 239 208 242 0.91 3 9 0.36 2.1e+03 0.3 0.0 18 35 272 289 256 299 0.79 4 9 1.3e-05 0.076 14.5 0.1 27 49 407 429 400 434 0.90 5 9 0.24 1.4e+03 0.8 0.0 23 53 463 493 459 494 0.88 6 9 1.3 7.5e+03 -1.5 0.0 27 48 525 546 521 551 0.77 7 9 0.58 3.4e+03 -0.4 0.1 17 42 547 572 543 576 0.75 8 9 0.12 7.2e+02 1.8 0.1 26 47 644 665 631 672 0.76 9 9 7.4e-05 0.44 12.1 0.2 26 48 716 738 706 742 0.92
Sequence Information
- Coding Sequence
- ATGCCAGCCCATAAGTCTGTTACTTCAAATGATAAAACCCCATGCAACTCCGACCATGATATTGAAGATATTGTAACTTTGGATAATGAAAATATCAATAACGACTTGGATAACAACAGTGACGATTTTGCTCAAGTTCTCCAACTACCTACTAATAATTGCCCATATTGttctattaaaataaaatttaagcaaaatttacGTCGTCACATTAAAAGTATACATCCTAATGAATATGACGAATGGTTAGACAATTTACCTttagaaaatattcgaaaaaatttAGCAGATGATCATGATGCATTAATAGCTAAATGgaagcaatatttagagtgtgaTATATGCAAAAATACATTTGCAAATTTTGATTTACTATGCACACATTTTGCTGGTGAACATGCTGATATTAAAAAATGCTATTATCAATGTTGTGATATAAAACTATACTCACGTTCCGAAATTGTGGAACATATGCATGTTCATATGGATCATAGTATTAAATGTAAAATATGTGGAACAAGTTTTAACACAAGACTTAAGCTTAAGTTACATTTACGAAATATACACGATGAAAATACTATTGCTACTGAATCAAGTTCTATTTTGGAGAATATTAATGAATCTGTCGAATCACAATTAGCTTTTAATGAATGCCCATATTGTTTTGATAAAATGAAACATGCAAAAAATTTGCATTGCCATATTAAACTTTTTCACTCGGAGGAATTTGATGAATTGCAGGATTCTTCAAACAACCAGCCACCACCACCTAGTGAAAAGAAGTGCACTGAAaagcttttaaataaaaatgaaaaagatAATAGCGAACTACCATATCAGTGTAATGTTTGTCAAAAACGTTTTCGCAACAAGTCAAAATTTCTTTACCATTCCGGTATTCACATTAAAGAGATACATCATAAATGTATTAAATGTGATAAAGGATTTTCCACCATAGAACTTCTTAAGAGACACGATTACCATTATCATAGAGCAAAACGTGATTGCGATCAGTGCCAAAAAACTTTTCCTGATAGTTATGCTCTTAAAAAACATATGCGTGCAGTGCATAGTGGTTCCGTAACTGttataaaacagaaaaaaaaatttaaaaaaatggcgacCAAAAATAATTCTGCAATCGATAAAGTGAatgcaacaataaataaaaattctgaagataaagaaaaacattttgaaaacaaAGAACTTTTCGAATGTCCTCATTGTCCTGCCAAACTTAAGCAACCAGGATATTTGCGTCGCCATATAGAATTAGAACATCCTGAAAAATTTGCCCAAACTTATAAACCTAAAATAATATTAGAAaacaacttaatttttaaaacaccTCAAGAAAACGATGCTTTCATCACTAAATGGAAACAAAATTTAGAATGTGATATATGTAAAAATACTTACGAAAACTTCAGTTTATTACGTGAACATTTCAAAAATAAGCATTCACACGTCCCTGGCAATTGCTACATAAGatgttgtgaaaaaaaattatattctcgTAGTGAAATAGTGGAACATATACAATATCATAACGATCCAAATAGTATTAAATGTGAGGTTTGTGGAAAATGTTTTTCCTTGTGGCGACACCTTAAGAAGCATATGACATTTGTACATAGCAAAGATAATGTAGATCGACCATATCAGTGTGAGATTTGCCATATGGGATTTTATAATAGACAGCAATTAAAAATGCACGCCGGTACTCACATCACAGCGATacatcatatttgcaacatatgtGATAAGGGATTTTCCACAAAAGAACTTCTTTGGAAACATGGACATAATGTTCATAAGACAAAAAAACATCTTTGTGAACAATGTGGTAAATCGTTTCAGGAAAAACATCTTTATGAAGAGCATTCTTGTGTTCAACCTCCTGGTACAAAACAATCACCAACATTGCAGTGCAATATATGCGGTGatcaatttaaatcaaaaatcaaTTTAAGACAGCATAAGCTTTCACATCATAGTGAAGATCCAAGCAAAGTTTACCTATGTGGTAAAACGTATTTAGATAAAAGAAGTTTACAATACCATAAGAAAAGAATTCATGAAAGTGTAAAAATTGTAGACAACAATCAAGTGGAAagtaaattaaaacattttaaggaCATAAAGTGTCCCCATTGCCCTACTAAAATTAAATCTCAAAGCAATTTGAAGCGTCATATTAGAATAAGACATCCTAAAGAATATGCCGCCAGTACTTTAAgtcaacagaaaaattttaaattaccaaATTTTATTGGTTCAAGAAATTGTTATTTAAATAGTAAAGTTATATAA
- Protein Sequence
- MPAHKSVTSNDKTPCNSDHDIEDIVTLDNENINNDLDNNSDDFAQVLQLPTNNCPYCSIKIKFKQNLRRHIKSIHPNEYDEWLDNLPLENIRKNLADDHDALIAKWKQYLECDICKNTFANFDLLCTHFAGEHADIKKCYYQCCDIKLYSRSEIVEHMHVHMDHSIKCKICGTSFNTRLKLKLHLRNIHDENTIATESSSILENINESVESQLAFNECPYCFDKMKHAKNLHCHIKLFHSEEFDELQDSSNNQPPPPSEKKCTEKLLNKNEKDNSELPYQCNVCQKRFRNKSKFLYHSGIHIKEIHHKCIKCDKGFSTIELLKRHDYHYHRAKRDCDQCQKTFPDSYALKKHMRAVHSGSVTVIKQKKKFKKMATKNNSAIDKVNATINKNSEDKEKHFENKELFECPHCPAKLKQPGYLRRHIELEHPEKFAQTYKPKIILENNLIFKTPQENDAFITKWKQNLECDICKNTYENFSLLREHFKNKHSHVPGNCYIRCCEKKLYSRSEIVEHIQYHNDPNSIKCEVCGKCFSLWRHLKKHMTFVHSKDNVDRPYQCEICHMGFYNRQQLKMHAGTHITAIHHICNICDKGFSTKELLWKHGHNVHKTKKHLCEQCGKSFQEKHLYEEHSCVQPPGTKQSPTLQCNICGDQFKSKINLRQHKLSHHSEDPSKVYLCGKTYLDKRSLQYHKKRIHESVKIVDNNQVESKLKHFKDIKCPHCPTKIKSQSNLKRHIRIRHPKEYAASTLSQQKNFKLPNFIGSRNCYLNSKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165784;
- 90% Identity
- iTF_01165784;
- 80% Identity
- iTF_01165784;