Pinf021175.1
Basic Information
- Insect
- Pegoplata infirma
- Gene Symbol
- -
- Assembly
- GCA_963921195.1
- Location
- OY992538.1:21037673-21039988[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0016 0.14 14.0 1.1 3 23 54 75 53 75 0.97 2 15 0.05 4.3 9.3 0.8 2 21 111 130 110 133 0.88 3 15 4.6e-05 0.0039 18.9 1.1 2 23 167 189 166 189 0.96 4 15 0.00048 0.041 15.7 2.7 1 23 279 301 279 301 0.92 5 15 0.039 3.3 9.7 0.8 1 19 307 325 307 325 0.95 6 15 3.9e-06 0.00033 22.3 0.3 3 23 336 357 335 357 0.96 7 15 0.00018 0.016 17.0 0.2 1 23 405 428 405 428 0.95 8 15 0.044 3.7 9.5 1.1 2 23 466 488 465 488 0.94 9 15 1.6e-05 0.0013 20.4 3.9 2 23 524 546 523 546 0.92 10 15 0.00041 0.035 15.9 1.5 1 23 555 577 555 577 0.97 11 15 8.5e-05 0.0072 18.0 1.6 1 23 583 606 583 606 0.90 12 15 0.2 17 7.4 2.9 3 19 613 629 611 632 0.87 13 15 0.00091 0.077 14.8 2.3 2 23 644 665 643 666 0.94 14 15 0.48 41 6.2 0.5 6 23 676 694 674 694 0.95 15 15 6e-06 0.00051 21.7 1.9 2 23 716 738 715 738 0.97
Sequence Information
- Coding Sequence
- ATGCCAGCCCATAAGTCTGTTACTTCAAATGATAAAACCCCATGCAACTCCGACCATGATATTGAAGATATTGTAACTTTGGATAATGAAAATATCAATAACGACTTGGATAACAACAGTGACGATTTTGCTCAAGTTCTCCAACTACCTACTAATAATTGCCCATATTGttctattaaaataaaatttaagcaaaatttacGTCGTCACATTAAAAGTATACATCCTAATGAATATGACGAATGGTTAGACAATTTACCTttagaaaatattcgaaaaaatttAGCAGATGATCATGATGCATTAATAGCTAAATGgaagcaatatttagagtgtgaTATATGCAAAAATACATTTGCAAATTTTGATTTACTATGCACACATTTTGCTGGTGAACATGCTGATATTAAAAAATGCTATTATCAATGTTGTGATATAAAACTATACTCACGTTCCGAAATTGTGGAACATATGCATGTTCATATGGATCATAGTATTAAATGTAAAATATGTGGAACAAGTTTTAACACAAGACTTAAGCTTAAGTTACATTTACGAAATATACACGATGAAAATACTATTGCTACTGAATCAAGTTCTATTTTGGAGAATATTAATGAATCTGTCGAATCACAATTAGCTTTTAATGAATGCCCATATTGTTTTGATAAAATGAAACATGCAAAAAATTTGCATTGCCATATTAAACTTTTTCACTCGGAGGAATTTGATGAATTGCAGGATTCTTCAAACAACCAGCCACCACCACCTAGTGAAAAGAAGTGCACTGAAaagcttttaaataaaaatgaaaaagatAATAGCGAACTACCATATCAGTGTAATGTTTGTCAAAAACGTTTTCGCAACAAGTCAAAATTTCTTTACCATTCCGGTATTCACATTAAAGAGATACATCATAAATGTATTAAATGTGATAAAGGATTTTCCACCATAGAACTTCTTAAGAGACACGATTACCATTATCATAGAGCAAAACGTGATTGCGATCAGTGCCAAAAAACTTTTCCTGATAGTTATGCTCTTAAAAAACATATGCGTGCAGTGCATAGTGGTTCCGTAACTGttataaaacagaaaaaaaaatttaaaaaaatggcgacCAAAAATAATTCTGCAATCGATAAAGTGAatgcaacaataaataaaaattctgaagataaagaaaaacattttgaaaacaaAGAACTTTTCGAATGTCCTCATTGTCCTGCCAAACTTAAGCAACCAGGATATTTGCGTCGCCATATAGAATTAGAACATCCTGAAAAATTTGCCCAAACTTATAAACCTAAAATAATATTAGAAaacaacttaatttttaaaacaccTCAAGAAAACGATGCTTTCATCACTAAATGGAAACAAAATTTAGAATGTGATATATGTAAAAATACTTACGAAAACTTCAGTTTATTACGTGAACATTTCAAAAATAAGCATTCACACGTCCCTGGCAATTGCTACATAAGatgttgtgaaaaaaaattatattctcgTAGTGAAATAGTGGAACATATACAATATCATAACGATCCAAATAGTATTAAATGTGAGGTTTGTGGAAAATGTTTTTCCTTGTGGCGACACCTTAAGAAGCATATGACATTTGTACATAGCAAAGATAATGTAGATCGACCATATCAGTGTGAGATTTGCCATATGGGATTTTATAATAGACAGCAATTAAAAATGCACGCCGGTACTCACATCACAGCGATacatcatatttgcaacatatgtGATAAGGGATTTTCCACAAAAGAACTTCTTTGGAAACATGGACATAATGTTCATAAGACAAAAAAACATCTTTGTGAACAATGTGGTAAATCGTTTCAGGAAAAACATCTTTATGAAGAGCATTCTTGTGTTCAACCTCCTGGTACAAAACAATCACCAACATTGCAGTGCAATATATGCGGTGatcaatttaaatcaaaaatcaaTTTAAGACAGCATAAGCTTTCACATCATAGTGAAGATCCAAGCAAAGTTTACCTATGTGGTAAAACGTATTTAGATAAAAGAAGTTTACAATACCATAAGAAAAGAATTCATGAAAGTGTAAAAATTGTAGACAACAATCAAGTGGAAagtaaattaaaacattttaaggaCATAAAGTGTCCCCATTGCCCTACTAAAATTAAATCTCAAAGCAATTTGAAGCGTCATATTAGAATAAGACATCCTAAAGAATATGCCGCCAGTACTTTAAgtcaacagaaaaattttaaattaccaaATTTTATTGGTTCAAGAAATTGTTATTTAAATAGTAAAGTTATATAA
- Protein Sequence
- MPAHKSVTSNDKTPCNSDHDIEDIVTLDNENINNDLDNNSDDFAQVLQLPTNNCPYCSIKIKFKQNLRRHIKSIHPNEYDEWLDNLPLENIRKNLADDHDALIAKWKQYLECDICKNTFANFDLLCTHFAGEHADIKKCYYQCCDIKLYSRSEIVEHMHVHMDHSIKCKICGTSFNTRLKLKLHLRNIHDENTIATESSSILENINESVESQLAFNECPYCFDKMKHAKNLHCHIKLFHSEEFDELQDSSNNQPPPPSEKKCTEKLLNKNEKDNSELPYQCNVCQKRFRNKSKFLYHSGIHIKEIHHKCIKCDKGFSTIELLKRHDYHYHRAKRDCDQCQKTFPDSYALKKHMRAVHSGSVTVIKQKKKFKKMATKNNSAIDKVNATINKNSEDKEKHFENKELFECPHCPAKLKQPGYLRRHIELEHPEKFAQTYKPKIILENNLIFKTPQENDAFITKWKQNLECDICKNTYENFSLLREHFKNKHSHVPGNCYIRCCEKKLYSRSEIVEHIQYHNDPNSIKCEVCGKCFSLWRHLKKHMTFVHSKDNVDRPYQCEICHMGFYNRQQLKMHAGTHITAIHHICNICDKGFSTKELLWKHGHNVHKTKKHLCEQCGKSFQEKHLYEEHSCVQPPGTKQSPTLQCNICGDQFKSKINLRQHKLSHHSEDPSKVYLCGKTYLDKRSLQYHKKRIHESVKIVDNNQVESKLKHFKDIKCPHCPTKIKSQSNLKRHIRIRHPKEYAASTLSQQKNFKLPNFIGSRNCYLNSKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01166237;
- 90% Identity
- iTF_01166237;
- 80% Identity
- iTF_01166237;