Pder005307.1
Basic Information
- Insect
- Pediacus dermestoides
- Gene Symbol
- -
- Assembly
- GCA_963942485.1
- Location
- OZ012625.1:58211240-58215908[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.87 5.3e+03 -1.9 0.3 34 48 178 192 173 195 0.80 2 8 0.0092 56 4.4 0.4 26 54 269 297 266 297 0.91 3 8 0.0002 1.2 9.7 0.0 22 44 321 343 316 346 0.91 4 8 0.016 1e+02 3.6 0.0 21 48 348 374 343 377 0.87 5 8 0.066 4.1e+02 1.7 0.1 23 47 406 430 398 436 0.82 6 8 0.05 3.1e+02 2.0 0.0 21 46 432 457 424 465 0.78 7 8 0.0053 33 5.2 0.0 21 48 460 487 451 491 0.84 8 8 0.001 6.4 7.4 0.0 21 44 488 511 486 517 0.90
Sequence Information
- Coding Sequence
- ATGGAGGAATGTGCATTAACTAATATTTGCCGAGCGTGTTTAACAGAAGAGGGTGAATTTCAATCAGTATTCGTCCCAGATGAAAACACAGGCCTAGCACTCCATTTGGCCGAGATGATGAGTGCGTGTGCTTCAGTACagGTAACATTTGGAGATGGTCTTCCAGAACAAATATGCAAAGCTTGTGCATCTAGGACAGTAAACACGTACCTATTCAAACTACAATGTGAGACAAGCGATGCAGTTTTACGGAAGCGTTTAAAGAAATCCCCAATGCATTACACCAGCGACCAGTTAAACATATACAGCGCAAACAACGCGTTACAACCACCTAGTgaatgtataataataaaaccggAACTGAATTTAGAACAGGATGAAATGCAACCCCAACCGAATATTGTCATAGAAGAATTCGATCATTTCAACAGACTGGAGGTAGATCACAGTGACAGTGAAAGCTCTGGTATAAATGACGATTTCGCCCAACTAGAGGAAAGACCGAAACTAGACAAGAATTTTGAGTGTGAAATATGCCAGAAGCGGTTTAGTCGGCATGATTTATTGCTGAGGCATAAAATTGCACATGCTTTGAAGATGGGGTTGGCGGCACAAAAAGTGGATATGCATAATAGTGCGGGAATTGGGAATGAAGCGAGTCCGCTTGTGATTAAAACTGAGGAAGATGTTATGTATACTTGCCAGGAGTGCGATTTAGTGTTTGTGAATAAGGACGATTTAGATGTGCATATGGATAGTCATGATAAGAAGTTTTTGGATACGAGGGAAATAGGATATGATAAGCAATGCATTATCTGCCCGAAGAAATTCAGAAAACAGTCGCACCTCAACCGCCACATGAAAATCCACTCTGCAGTCAAACCTCACGTCTGTACCATCTGCAATAAGGGTTTTCTTAGGCCGGAACAACTAGCCAACCACATGAACATCCATACTGGCAAAAAACCGCACACCTGTGATATCTGTTTTAAAGGCTTCAatcaaatttctaatttaaagGATCATATGCGTACACATAATGGAGAGCGGCCGTTTTTGTGTTCGACATGTGGGAAAGGGTTCAATCAACTAGGAAATTTAAGACAGCATACTATTCGACATACTGGAATTAAGGCGCATTTGTGTAGTACTTGTGGGAGTGGATTCGCTAGTAAGGGGGAGCTGTCGGCGCATTTACGGAAACATACAGGAGCAAGACCTTTCGTGTGTACAATCTGCCATCACGGTTTCACCACATCCAGTTCGTTGACCAAGCACAAACGCATCCATTCAGGTGAAAAGCCCTACGAATGTGACGTTTGCAAAATGAAATTCTCTCGATCTGGTATCCTAGCAAGGCACAAACGAACTCACACAGGTGAAAAACCGTATGTATGTAAATATTGTACAAAAGCGTTTTCCCAGTCAAATGATTTAACTTCGCATATGAGGATACACACCGGGGAAAAACCGTATATTTGTGATGTGTGTGGACAGGCGTTCCGGCAAAGTTCAGCTTTGAAAAGTCATAAAAAGACGCATTTAATGAGGAGTATGCTGGAAATGGataaaaatgtgaatatttattGCTGA
- Protein Sequence
- MEECALTNICRACLTEEGEFQSVFVPDENTGLALHLAEMMSACASVQVTFGDGLPEQICKACASRTVNTYLFKLQCETSDAVLRKRLKKSPMHYTSDQLNIYSANNALQPPSECIIIKPELNLEQDEMQPQPNIVIEEFDHFNRLEVDHSDSESSGINDDFAQLEERPKLDKNFECEICQKRFSRHDLLLRHKIAHALKMGLAAQKVDMHNSAGIGNEASPLVIKTEEDVMYTCQECDLVFVNKDDLDVHMDSHDKKFLDTREIGYDKQCIICPKKFRKQSHLNRHMKIHSAVKPHVCTICNKGFLRPEQLANHMNIHTGKKPHTCDICFKGFNQISNLKDHMRTHNGERPFLCSTCGKGFNQLGNLRQHTIRHTGIKAHLCSTCGSGFASKGELSAHLRKHTGARPFVCTICHHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKYCTKAFSQSNDLTSHMRIHTGEKPYICDVCGQAFRQSSALKSHKKTHLMRSMLEMDKNVNIYC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01163380;
- 90% Identity
- iTF_01163380;
- 80% Identity
- iTF_01163380;