Basic Information

Insect: Pediacus dermestoides
Gene Symbol: -
Assembly: GCA_963942485.1
Location: OZ012625.1:58211240-58215908[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.7e-06 0.00089 20.0 1.7 1 23 174 196 174 196 0.95

2 11 4.5e-06 0.00041 21.1 0.1 1 23 232 254 232 254 0.98

3 11 6.4e-06 0.00059 20.6 3.6 2 23 269 290 268 290 0.93

4 11 2.4e-05 0.0022 18.8 0.4 1 23 296 318 296 318 0.97

5 11 8.8e-07 8e-05 23.3 2.5 1 23 324 346 324 346 0.98

6 11 1e-05 0.00095 19.9 0.7 1 23 352 374 352 374 0.95

7 11 0.00017 0.016 16.1 0.7 3 23 382 402 380 402 0.96

8 11 5.8e-06 0.00053 20.7 5.2 1 23 408 430 408 430 0.98

9 11 7.6e-05 0.0069 17.2 0.8 1 23 436 458 436 458 0.99

10 11 3.8e-08 3.5e-06 27.6 1.2 1 23 464 486 464 486 0.99

11 11 3.4e-07 3.1e-05 24.6 0.5 1 23 492 514 492 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.7e-06	0.00089	20.0	1.7	1	23	174	196	174	196	0.95
2	11	4.5e-06	0.00041	21.1	0.1	1	23	232	254	232	254	0.98
3	11	6.4e-06	0.00059	20.6	3.6	2	23	269	290	268	290	0.93
4	11	2.4e-05	0.0022	18.8	0.4	1	23	296	318	296	318	0.97
5	11	8.8e-07	8e-05	23.3	2.5	1	23	324	346	324	346	0.98
6	11	1e-05	0.00095	19.9	0.7	1	23	352	374	352	374	0.95
7	11	0.00017	0.016	16.1	0.7	3	23	382	402	380	402	0.96
8	11	5.8e-06	0.00053	20.7	5.2	1	23	408	430	408	430	0.98
9	11	7.6e-05	0.0069	17.2	0.8	1	23	436	458	436	458	0.99
10	11	3.8e-08	3.5e-06	27.6	1.2	1	23	464	486	464	486	0.99
11	11	3.4e-07	3.1e-05	24.6	0.5	1	23	492	514	492	514	0.98

Sequence Information

Coding Sequence: ATGGAGGAATGTGCATTAACTAATATTTGCCGAGCGTGTTTAACAGAAGAGGGTGAATTTCAATCAGTATTCGTCCCAGATGAAAACACAGGCCTAGCACTCCATTTGGCCGAGATGATGAGTGCGTGTGCTTCAGTACagGTAACATTTGGAGATGGTCTTCCAGAACAAATATGCAAAGCTTGTGCATCTAGGACAGTAAACACGTACCTATTCAAACTACAATGTGAGACAAGCGATGCAGTTTTACGGAAGCGTTTAAAGAAATCCCCAATGCATTACACCAGCGACCAGTTAAACATATACAGCGCAAACAACGCGTTACAACCACCTAGTgaatgtataataataaaaccggAACTGAATTTAGAACAGGATGAAATGCAACCCCAACCGAATATTGTCATAGAAGAATTCGATCATTTCAACAGACTGGAGGTAGATCACAGTGACAGTGAAAGCTCTGGTATAAATGACGATTTCGCCCAACTAGAGGAAAGACCGAAACTAGACAAGAATTTTGAGTGTGAAATATGCCAGAAGCGGTTTAGTCGGCATGATTTATTGCTGAGGCATAAAATTGCACATGCTTTGAAGATGGGGTTGGCGGCACAAAAAGTGGATATGCATAATAGTGCGGGAATTGGGAATGAAGCGAGTCCGCTTGTGATTAAAACTGAGGAAGATGTTATGTATACTTGCCAGGAGTGCGATTTAGTGTTTGTGAATAAGGACGATTTAGATGTGCATATGGATAGTCATGATAAGAAGTTTTTGGATACGAGGGAAATAGGATATGATAAGCAATGCATTATCTGCCCGAAGAAATTCAGAAAACAGTCGCACCTCAACCGCCACATGAAAATCCACTCTGCAGTCAAACCTCACGTCTGTACCATCTGCAATAAGGGTTTTCTTAGGCCGGAACAACTAGCCAACCACATGAACATCCATACTGGCAAAAAACCGCACACCTGTGATATCTGTTTTAAAGGCTTCAatcaaatttctaatttaaagGATCATATGCGTACACATAATGGAGAGCGGCCGTTTTTGTGTTCGACATGTGGGAAAGGGTTCAATCAACTAGGAAATTTAAGACAGCATACTATTCGACATACTGGAATTAAGGCGCATTTGTGTAGTACTTGTGGGAGTGGATTCGCTAGTAAGGGGGAGCTGTCGGCGCATTTACGGAAACATACAGGAGCAAGACCTTTCGTGTGTACAATCTGCCATCACGGTTTCACCACATCCAGTTCGTTGACCAAGCACAAACGCATCCATTCAGGTGAAAAGCCCTACGAATGTGACGTTTGCAAAATGAAATTCTCTCGATCTGGTATCCTAGCAAGGCACAAACGAACTCACACAGGTGAAAAACCGTATGTATGTAAATATTGTACAAAAGCGTTTTCCCAGTCAAATGATTTAACTTCGCATATGAGGATACACACCGGGGAAAAACCGTATATTTGTGATGTGTGTGGACAGGCGTTCCGGCAAAGTTCAGCTTTGAAAAGTCATAAAAAGACGCATTTAATGAGGAGTATGCTGGAAATGGataaaaatgtgaatatttattGCTGA
Protein Sequence: MEECALTNICRACLTEEGEFQSVFVPDENTGLALHLAEMMSACASVQVTFGDGLPEQICKACASRTVNTYLFKLQCETSDAVLRKRLKKSPMHYTSDQLNIYSANNALQPPSECIIIKPELNLEQDEMQPQPNIVIEEFDHFNRLEVDHSDSESSGINDDFAQLEERPKLDKNFECEICQKRFSRHDLLLRHKIAHALKMGLAAQKVDMHNSAGIGNEASPLVIKTEEDVMYTCQECDLVFVNKDDLDVHMDSHDKKFLDTREIGYDKQCIICPKKFRKQSHLNRHMKIHSAVKPHVCTICNKGFLRPEQLANHMNIHTGKKPHTCDICFKGFNQISNLKDHMRTHNGERPFLCSTCGKGFNQLGNLRQHTIRHTGIKAHLCSTCGSGFASKGELSAHLRKHTGARPFVCTICHHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKYCTKAFSQSNDLTSHMRIHTGEKPYICDVCGQAFRQSSALKSHKKTHLMRSMLEMDKNVNIYC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01163614;
90% Identity: iTF_01163614;
80% Identity: iTF_01163614;