Prec019029.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720248.1:1078975-1085027[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00019 3.9 8.8 0.5 18 48 190 221 186 225 0.80 2 18 0.001 21 6.5 0.2 21 47 222 248 218 255 0.84 3 18 0.039 7.9e+02 1.4 0.0 18 30 275 287 270 295 0.85 4 18 0.0097 2e+02 3.4 0.6 21 36 318 333 304 340 0.73 5 18 0.0012 25 6.2 0.5 20 52 458 490 448 492 0.83 6 18 0.081 1.6e+03 0.4 0.2 21 44 487 510 483 520 0.74 7 18 0.0028 56 5.1 0.0 21 52 543 574 534 576 0.81 8 18 0.27 5.5e+03 -1.3 0.0 22 45 600 623 591 630 0.79 9 18 0.0039 79 4.6 0.1 21 51 627 657 619 658 0.85 10 18 0.00029 5.8 8.3 0.1 23 44 657 678 651 684 0.88 11 18 0.011 2.3e+02 3.1 0.2 26 46 688 708 682 712 0.89 12 18 0.16 3.2e+03 -0.5 0.0 22 51 712 741 710 744 0.81 13 18 0.14 2.8e+03 -0.3 0.1 21 31 739 749 736 764 0.82 14 18 2e-05 0.4 12.0 0.0 21 51 767 797 757 798 0.86 15 18 0.0039 78 4.6 0.0 21 46 795 820 791 822 0.91 16 18 0.0012 25 6.2 0.0 21 52 823 854 819 854 0.87 17 18 0.001 21 6.5 0.1 21 48 851 878 847 884 0.88 18 18 0.36 7.2e+03 -1.7 0.1 21 32 880 891 873 906 0.70
Sequence Information
- Coding Sequence
- ATGTGTCAGAAATCAGACAAAATCTGCAGAGATCTTTACCGAAACAACCCTCAGGTGACTGAGAAGACGCTTGCTGAGCATAATCTGGGATGGTTACACAACTTGACTATGTCACCTGTAAAAACCCTGTCCACTTATGAAGATGCAACCAATGATATTGAAATATTCTTCAAAGAAGAAAGAtcttcagatgatgatgatgatgatgcattcaTACATGAAGGCTTTGAAACATTTGTAGATGTTGTCAAAACAGAAGACAGTTCTCAACTTGATGCTAAACACAACTCAAAGGAAGAAAAATTTAGCCCTAATAATGATAACCATAAGTTAACCAATTCCtgtgaaaaatgcaataaaaccTTTGAAACTAAAATAAGGCTAGAGAGACACAAACTAACACACAACAAATTAAAGTCATATAACTGTGAATTCTGTATCAAGACATTTCCAAAAAAGAAGCTGCTTAAAATACACTCAATAAAAAATCATACTGGAGAAAAGCCATATGCCTGTGAAAACTGTGACAAAAGGTTCAACCGTAAGAGACTCCTGGTTGAACACAGCAGGATCCACAGTGGCGAAAAGCCATATAGTTGTGAAGTTTGCAATAAGTCATTTGCGCAAAGTTCAACTCTCAGGTGTCACATGAGAGTGcacactggagaaaagccaCATACATGCGACATTTGCAATGAGTCATTCACTCGGAAACATTCATTGAACAAACACCTCCGCACCCACACCGGGGAAAAACCTTACACTTGCAACACATGCAACAAAAGTTTTTCAGCAAAGAGTGTACTCACAGTACACATGCAGAGACACACTGGAGAGAGACCAATCACATGCAAAGTGTGCGACAAAACATTTGCTGTGAAAGATGGCTGGGTGGCACACATGAGGATCCACACTGGAGACAAACCTTTCATCTGCAGCACATGTGAGCACAGCAGACCTACCGCAGTATGCTACATGTGTTATGCCCAGTTGCGCAGATGTATAAGGTTCTACGAGATGTGCCAGAAATCAGAGAAAATCTGCAGAGATCTGTTTCAGAATAATCTAGAGTTGACACAGGAGTTTCTTGCGAAACATAATTTGGGATGGATATACAACTTGTCGACGACTCCTGTGAATTTAGAGTCATATGATAATAGTGAATCAGAAATTAGTATCAAAGAAGAAGACACCTCAGATGACGAAGTGTTAATGCCCATGTTTGTTGAAGAAATCAAAACTGAATGCATAAAGCCTCATGATGTAACTATTGTTGGAATAGATTTTACAGCAAGCAAACTTCTTGATAATGGAAATACTGATAAAAAAGACTCTAAAATAAAGCAAGAAAGGCGAATGCAGCGAAAACGGAATGCAGCTAAGCCATTTAAATGTGATGTTTGTAACAAGTTGTACACTAAAAGTTGTCATTTGAAAAGGCATATGAGAATACACAATGATGAAAAgccacatgcatgcaaaatatGCAAAGAAAGATACAGTAGGATGGATTCTTTAAAAACCCACATGTTAACACATACAGCAGAAATGCCCACTTGTGATCTATGTGGTAAGAGCTTTTCTACAAAAACGGTTCTCAACAGACACATCTCGCAAATACATTCTGGTGAAAAACCACTGACATGCAAAGTTTGCAATACGTCATTTGCTGTAAGAGACGGTTTGAGGGCGCACATGAAGATTCACGTTGGATATAAACCATTTGTCTGCAGTGTATGTGGCAAATCCTTCTTTGACAAGAGTCAATTGAAAGTGCATACTAGAATACATTCAGGAGATAAGCCATTTGCCTGCGACTTGTGCAACAAGTCATTTACTCAGTTAGCTATATTGAAAAGTCATATGCATACTCATACTGGAGAAAAGCCATACACTTGCACAGTATGCAATAAGTCGTTTAGACATAGATCCACTTTGGCTTATCATACATCACTACATACTGGCGGAAAGCCATATACATGTCCTATATGTAACAGCATATTTGAACTCAAGCCTCTATTACGCAAACACATGGCGACGCATACTGATAACACCTCCCATGTATGCAAAGTCTGTAACAAAGCTTTTATTCAAAGTGTTTGCTTGAGGAAACATATGAAAATTCACACAGAGGAACGACAATATACTTGCAATGTATGTGGAAAATCATTCTTCCGAAGCACCGGCTTGAATAATCACATGAAGGTACATACTGGAGAAAAGCCCTTCACATGTAATGTATGTGGGAAATCATTCTCTCTTAATTCAACTTTAGTGAAGCACAAGCGAATTCACACTGGCGAAAAGCCATATACATGTGATATTTGCAATAAGCAGTTCAGGCTCAGCGGCGCCCTGAGCAGACACATCAAAATGcacactggagaaaagccaTTCAGCTGTAACATATGCAGCAAGTCATTTATTGGAAGTGGTGAACTGAAGAAACATTTGAAGGTACATAGCGAAGAAAAGCCATATACTTGCTACACTTGTACAAAATCTTTCAGAGATAAAAAATCTTTGAAGATTCATATAAGATTGCATACTGGAGAAAAGCCATATACGTGCAATGTGTGCGGCAAGTCCTTTACTCAGAGTAGTAGTTTGAGTATGCATATCAAGAGAGTTCACAGTGAAGAGAAACCTTACAGCTGTACTGTGTGCGGCAAAGCATTCCCATTGAATAGTGTTCTGACCAAACATATGAGAATACACACTAAACACGAGCCACAATAG
- Protein Sequence
- MCQKSDKICRDLYRNNPQVTEKTLAEHNLGWLHNLTMSPVKTLSTYEDATNDIEIFFKEERSSDDDDDDAFIHEGFETFVDVVKTEDSSQLDAKHNSKEEKFSPNNDNHKLTNSCEKCNKTFETKIRLERHKLTHNKLKSYNCEFCIKTFPKKKLLKIHSIKNHTGEKPYACENCDKRFNRKRLLVEHSRIHSGEKPYSCEVCNKSFAQSSTLRCHMRVHTGEKPHTCDICNESFTRKHSLNKHLRTHTGEKPYTCNTCNKSFSAKSVLTVHMQRHTGERPITCKVCDKTFAVKDGWVAHMRIHTGDKPFICSTCEHSRPTAVCYMCYAQLRRCIRFYEMCQKSEKICRDLFQNNLELTQEFLAKHNLGWIYNLSTTPVNLESYDNSESEISIKEEDTSDDEVLMPMFVEEIKTECIKPHDVTIVGIDFTASKLLDNGNTDKKDSKIKQERRMQRKRNAAKPFKCDVCNKLYTKSCHLKRHMRIHNDEKPHACKICKERYSRMDSLKTHMLTHTAEMPTCDLCGKSFSTKTVLNRHISQIHSGEKPLTCKVCNTSFAVRDGLRAHMKIHVGYKPFVCSVCGKSFFDKSQLKVHTRIHSGDKPFACDLCNKSFTQLAILKSHMHTHTGEKPYTCTVCNKSFRHRSTLAYHTSLHTGGKPYTCPICNSIFELKPLLRKHMATHTDNTSHVCKVCNKAFIQSVCLRKHMKIHTEERQYTCNVCGKSFFRSTGLNNHMKVHTGEKPFTCNVCGKSFSLNSTLVKHKRIHTGEKPYTCDICNKQFRLSGALSRHIKMHTGEKPFSCNICSKSFIGSGELKKHLKVHSEEKPYTCYTCTKSFRDKKSLKIHIRLHTGEKPYTCNVCGKSFTQSSSLSMHIKRVHSEEKPYSCTVCGKAFPLNSVLTKHMRIHTKHEPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01161567;
- 90% Identity
- iTF_01161567;
- 80% Identity
- iTF_01161567;