Pste009986.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- SLC25A17
- Assembly
- None
- Location
- scaffold17:341026-347317[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00011 0.5 10.1 0.0 21 46 634 659 629 662 0.91 2 7 0.00059 2.6 7.8 0.1 21 44 662 685 660 689 0.91 3 7 0.0031 14 5.5 0.1 21 45 690 714 685 719 0.90 4 7 0.0052 23 4.8 0.1 21 44 746 769 741 774 0.88 5 7 0.00016 0.73 9.6 0.2 18 47 772 801 767 807 0.83 6 7 0.027 1.2e+02 2.5 0.0 22 44 832 854 827 859 0.88 7 7 7.5e-05 0.34 10.7 0.0 21 45 881 905 867 911 0.92
Sequence Information
- Coding Sequence
- ATGGCAAACTCCAAAGAATTGAAGGATGTCTTCAACTACAACTCTCTCGTGCACGCAATTAGTGGTTCAGTGGGAAGCATCGTTGCTATGTCTGCTTTCTATCCGTTTGACACAGTTCGATCACGATTGCAATTAGGTGGAATTAAGAATAGCAAAAATGAATCTACATTCCAGCTCATATTAAGTCTTTTGAATAATGAGGGAGTTGCTAATCGTGGGATAAAGCCAGTTCTACAAAGTGTATTGCTCTCTAATTTTGTGTACTTTTACACATTTCACACGCTCAAAGCTCTGCGAAGTAAAGGTGCCAATGCTACAGTAGGAAGTGATTTGATTTTGGGAGCTTTAGCTGGAGTTGTCAACGTTCTCAGCACTACTCCCTTTTGGGTCGCGAACACTCGCTTGAAGATGAAAGGAATCCGTTCAGATTTCAACTTACCCTACGATAATCTGGTAGATGGATTAAAACATATCTTCAAAACTGAAGGAGTCGCTGGATTATGGTCAGGCACAATGCCATCACTTATGTTGGTATCAAATCCTGCCATTCAGTTTGCATGCTACGAGGCTATCAAGAGGAATTTAATGAAAGTTTATGGACAGCAGTTGCCAGCTATTTCATATTTCTTTATTGGAGCGCTCGCTAAATCAATTTCAACGGTCATCACTTATCCCTTGCAGTTGATTCAAACTAAACTACGTCACGGCTCCAAAGACAACTTACCGGCAAAAGCTGGAGTTATGGATATGCTTTTCTTCATATTAAAGAGAAACGGAGTTCAGGGACTATTTGTTGGACTCAACGCCAAGTTATGGCAAACTGTATTAACAGCTTCTTTCATGTTTTACACGTATGAAAAGATAAGGAGATTCTCTACATACTTTGAGGGCCAACCAACAAATTATCCAAATAACAAGATGCTGCAAACTAAATATGGAGCAGTGGACTCTCAAAACAATCCCATCAATACTCAGAATCAACACATTAGTTTACCGAAAAATATGCCGCTCCATACACAAGGCTTCGGTTTCAATATTCCTGTACAAATCCTCAGCCCATTTGGCCACTCCCARGTTATCATCTCCACAGACCAAAAACTAAACCCAGCTCTGATGGGAATTGAGAAAAATCACGACTGCCATATTTGCCATAAAAAATTTCCAAATCTCTCAAATYTMAATGCTCACATTATTCAGCATGTAGACGCACAGGAAGCAGCATTCAGAAATATTGTAACAGCTTCATCAGCTGKTAATCATTCTGCTGCAAATTTGATGAGCAGTGGTTTGGTAAAACATCATAATCATCAAATYAACTCAATTGTGGATTATCAGCATAATATCAGCAATCAGAGTAACGGAAATGAAGTAAAAAGTCATCAGCCGCAAGCCACATTYGAAATTAAATCCAGYAACCTCCATGAATACACAATTGTTAACACTACACCACAAATCATTCAGCAGCAATCTCGTGAAAGGGAGAAAAATGTGATACAAATGGTTTCAAATCTCAAACAAGTCCCTGTTGAATATCACATTCAGCAACAGCAACACGCCGCAGCAATTGTAGCAGCTATGAACCAACCTCATGGTAGTTCTTCTAAAAGTGCCATAAATTCGTTCGTGAACAGCACAATAAAATTCGAACATAACTCACCGCCAATTCAGGCCTCTGAAGTTTATCCCAATTCTCAGATGATTGTGGATACTCAGACTAACGAGGACATGCAATCAACGCCATCTTCAGCGTCTTCACCTATTTCTAATCATCAGACTACAACTCCAACACCGACGGCCAATGGAGTTGATAGTGTTTCAGGAGCAGCCTWCAAGTGCCAAGTGTGTGACAAAGCKTTTACAACGATGGGAAATCTCAATTTGCATATCAAAATTCATTCAGGAGAAAAGCCATACAAGTGCAGTGTCTGTTTTAAAGGATTCATACAAAGCAATAATTTAGCGACTCATTTAAAAATACATACAGGAGAACGACCTCACGAGTGTTCTGTTTGCCTTAAACGGTTTTCACAGTCTAATAATCTAAAGACACATATGAGAACCCACACGGGTGAACGGCCATACAGCTGCACCTTATGTTCCAAAACTTTTAATCAGAAAAACAACTTATCTACCCATCTTCGYACTCATGCTGATTATCATCCGTCGAATTGCAGTATTTGCTCCCAGCACTTTTCCAGTTTYAACGAATTGTTTTATCATATGAGAGATCACACCGATGAAAAACCCCACATTTGCTCGATATGCAACAAAGTATTTTCTCAACTGCCCGAACTAAATGAACACATCAAGCAGCATTCAAATCCAACAAAACCCTTCCAGTGTAACATTTGCCAAAAACAATTTTCTCAGTCAAACAATTTAAAAACTCACATCAAGACACACATCTATCAAGATCCGTTCAAGTGCAATATGTGTTCGCGCTCTTTTCAAGAAGAGGAAGAATATGCTCTACACATCAGGATTCATTCTCTGGACAAACCGTATGAATGTACCTTCTGTGGCAAAAAGTTTATACAAAGCAATAATTTGAAGACACATGTTAGAACCCACACGGGCACGCAGTGTTCCAAGACATTTAATCAAAAGAACAACCTAAACACACATATGAGAGTCCACACGGGTGAGAAGCCTTTCGAGTGCACGATCTGTGATCGAAGGTTCAATCAATCAAATAACCTCAACAAGCATTTAAAGACCCATGGCCAAGAGAAAGAACTCACTCAGCAAATGGAAAACGAGATGGAAAAAATGATGAACACCGTTATCAATCAGAGCTAG
- Protein Sequence
- MANSKELKDVFNYNSLVHAISGSVGSIVAMSAFYPFDTVRSRLQLGGIKNSKNESTFQLILSLLNNEGVANRGIKPVLQSVLLSNFVYFYTFHTLKALRSKGANATVGSDLILGALAGVVNVLSTTPFWVANTRLKMKGIRSDFNLPYDNLVDGLKHIFKTEGVAGLWSGTMPSLMLVSNPAIQFACYEAIKRNLMKVYGQQLPAISYFFIGALAKSISTVITYPLQLIQTKLRHGSKDNLPAKAGVMDMLFFILKRNGVQGLFVGLNAKLWQTVLTASFMFYTYEKIRRFSTYFEGQPTNYPNNKMLQTKYGAVDSQNNPINTQNQHISLPKNMPLHTQGFGFNIPVQILSPFGHSQVIISTDQKLNPALMGIEKNHDCHICHKKFPNLSNXNAHIIQHVDAQEAAFRNIVTASSAXNHSAANLMSSGLVKHHNHQINSIVDYQHNISNQSNGNEVKSHQPQATFEIKSSNLHEYTIVNTTPQIIQQQSREREKNVIQMVSNLKQVPVEYHIQQQQHAAAIVAAMNQPHGSSSKSAINSFVNSTIKFEHNSPPIQASEVYPNSQMIVDTQTNEDMQSTPSSASSPISNHQTTTPTPTANGVDSVSGAAXKCQVCDKAFTTMGNLNLHIKIHSGEKPYKCSVCFKGFIQSNNLATHLKIHTGERPHECSVCLKRFSQSNNLKTHMRTHTGERPYSCTLCSKTFNQKNNLSTHLRTHADYHPSNCSICSQHFSSFNELFYHMRDHTDEKPHICSICNKVFSQLPELNEHIKQHSNPTKPFQCNICQKQFSQSNNLKTHIKTHIYQDPFKCNMCSRSFQEEEEYALHIRIHSLDKPYECTFCGKKFIQSNNLKTHVRTHTGTQCSKTFNQKNNLNTHMRVHTGEKPFECTICDRRFNQSNNLNKHLKTHGQEKELTQQMENEMEKMMNTVINQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01160649;
- 90% Identity
- iTF_01160649;
- 80% Identity
- iTF_01160649;