Basic Information

Insect: Parnassius smintheus
Gene Symbol: -
Assembly: GCA_036936625.1
Location: JAUPFT010000011.1:16328305-16340121[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0032 1 12.2 1.0 3 23 209 230 208 230 0.96

2 23 0.23 73 6.4 0.3 1 22 618 639 618 639 0.95

3 23 4.4 1.4e+03 2.3 0.3 1 22 681 702 681 704 0.82

4 23 0.14 45 7.0 0.3 3 21 715 733 713 734 0.93

5 23 0.23 74 6.3 0.0 3 23 743 764 741 764 0.93

6 23 0.0039 1.3 11.9 0.1 3 23 785 806 783 806 0.96

7 23 0.0012 0.41 13.5 2.5 1 23 812 835 812 835 0.95

8 23 0.083 27 7.7 0.0 1 23 861 884 861 884 0.90

9 23 0.048 15 8.5 4.2 1 23 889 911 889 911 0.97

10 23 0.0061 2 11.3 0.2 1 23 917 940 917 940 0.95

11 23 0.0015 0.5 13.2 1.3 1 23 953 975 953 975 0.97

12 23 0.00012 0.038 16.7 1.8 1 23 1024 1047 1024 1047 0.97

13 23 0.0031 1 12.2 1.7 1 23 1109 1132 1109 1132 0.96

14 23 0.00073 0.24 14.2 2.1 2 23 1157 1179 1156 1179 0.95

15 23 0.057 19 8.2 0.1 2 23 1185 1207 1184 1207 0.93

16 23 0.0065 2.1 11.2 0.2 1 21 1251 1271 1251 1272 0.95

17 23 0.00028 0.09 15.5 1.0 1 23 1282 1304 1282 1304 0.93

18 23 7.4e-05 0.024 17.3 0.3 2 23 1393 1415 1393 1415 0.93

19 23 1.2e-07 3.8e-05 26.1 1.1 3 23 1422 1442 1421 1442 0.98

20 23 0.0034 1.1 12.1 0.7 1 23 1461 1483 1461 1484 0.93

21 23 0.094 31 7.5 0.0 1 23 1504 1526 1504 1526 0.98

22 23 0.0079 2.6 10.9 0.4 1 23 1532 1555 1532 1555 0.95

23 23 0.00017 0.054 16.2 0.4 1 23 1563 1586 1563 1586 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0032	1	12.2	1.0	3	23	209	230	208	230	0.96
2	23	0.23	73	6.4	0.3	1	22	618	639	618	639	0.95
3	23	4.4	1.4e+03	2.3	0.3	1	22	681	702	681	704	0.82
4	23	0.14	45	7.0	0.3	3	21	715	733	713	734	0.93
5	23	0.23	74	6.3	0.0	3	23	743	764	741	764	0.93
6	23	0.0039	1.3	11.9	0.1	3	23	785	806	783	806	0.96
7	23	0.0012	0.41	13.5	2.5	1	23	812	835	812	835	0.95
8	23	0.083	27	7.7	0.0	1	23	861	884	861	884	0.90
9	23	0.048	15	8.5	4.2	1	23	889	911	889	911	0.97
10	23	0.0061	2	11.3	0.2	1	23	917	940	917	940	0.95
11	23	0.0015	0.5	13.2	1.3	1	23	953	975	953	975	0.97
12	23	0.00012	0.038	16.7	1.8	1	23	1024	1047	1024	1047	0.97
13	23	0.0031	1	12.2	1.7	1	23	1109	1132	1109	1132	0.96
14	23	0.00073	0.24	14.2	2.1	2	23	1157	1179	1156	1179	0.95
15	23	0.057	19	8.2	0.1	2	23	1185	1207	1184	1207	0.93
16	23	0.0065	2.1	11.2	0.2	1	21	1251	1271	1251	1272	0.95
17	23	0.00028	0.09	15.5	1.0	1	23	1282	1304	1282	1304	0.93
18	23	7.4e-05	0.024	17.3	0.3	2	23	1393	1415	1393	1415	0.93
19	23	1.2e-07	3.8e-05	26.1	1.1	3	23	1422	1442	1421	1442	0.98
20	23	0.0034	1.1	12.1	0.7	1	23	1461	1483	1461	1484	0.93
21	23	0.094	31	7.5	0.0	1	23	1504	1526	1504	1526	0.98
22	23	0.0079	2.6	10.9	0.4	1	23	1532	1555	1532	1555	0.95
23	23	0.00017	0.054	16.2	0.4	1	23	1563	1586	1563	1586	0.96

Sequence Information

Coding Sequence: atgAGTGTTAATTATGATAGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGCCATCGCATCAAAAATTAAGGATTGTGTGTCCGTACAGATAAACGAAGATGACGACCTGCCAACTAATGTTTGCAAGAAATGCATGGACAATGTTAATAACTGGCATATTTTTAAGGCTGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGATTAAAAATGATGGCAGCCAACTAGAAGAGGTGCAAATTAAAAGTGAACCTTTGTCTGATGAGGTTTATGATGATGGAGTGGTTATTGATGGCTCCTACCCTGACCTTGAGaaTGCATCTACATCCAGCAAAGTACAACCAGAAGGTCCACCTATCTTGGCATCGTTGGGTCTTACACCGAGGAGTGATAAGGGCATGGACAGTGAAAAAGATGAAGAAGAAGATGAAGATGAAGAGATGAATGATTCCAGTCAACATTATGCAAGTGCGCCCACCAATATGCCTGAAGTGTCAATCACAGTCATGCGTCCCACTGGGGAAACATTGCATGCCCGACAAGGAATCCAACAACTTGCCTCTAAGGATTGTTTAGTATGCGGTCGATCTTATAGGTATTCGCATAACGCAAGGCGTCATGAGCTTACTGCGCATAGTTTTGATAGATACACAAATAAAATAACCATCAAAAAGTCTCAAACACACATGCAACCAAAACTCAGACCCAATCCATTTAATCCGAAAGCAAGGCTAATGCCTAATCCAATCAATCATAAAATGCAGCTTGTTCAAAAAGGGATTCCTACCAAAATTATGCAGCAGAAAGTTGTAGCCCCACCAAAGCCTATACCAATAAAAGCGCCAAAAGGCTCGCAAAATAATTTGCCGTATCCACTTCGCATAAAAGCTCTTAAAGACTTGCAAATTAAGAAAAAAGAACCTCAAATTTTAAAAACGTTATTGACAACAAAACCTGAAATTTTGGTATCTGAACCAGAAATAATTAACTCTGCTCCAGAAAGTCCGGAAACTTTGATTTCTGAGCCGGAAATAGCTTCATTTCAAGTAGAAACCATTCTGGAAGAACCAGAGACTTATAATCAAGAACAAGACGGTGAAGAGGTAGATGGTGATACGCAAAATAATCAGAGTCAAAATTACGACACTGTTGATATGGATTCTGATAATGAAATTGAAATCGCACGTCAGCAAGAAGACGCGGTGGAAGGTGAAGCCAAACTTGAAGAAGATCACCAAGTTGAAAACGAAGCTGAAGAAGGtaatgaaatagaaaatttggACAATGGCGATGAAAACAATATTGAAAGAAACCCTAGCGACAATGAAAATGATCACATTGACGATACTGCTGATAGTCAAGATGAAATACAAATTGTTAATGAAACGGATGGTAGGGAGGAAGATGAAACCAAAGAAGAAGAAGATCATGATGAGAGGGACGGTGAACAGCCGGAGTATAACCATGAAGAAAATGAGGATGACGATGATGAGCTACCACCTATAGCTCCAGTTGTAGAAATTAATGAAGACTTGCAAATGAATTCGTTTAATAGTGAGATACACGAAGAAGAGGAGCTTGATGAAACAGTTGACCCAAATGATACTGCAGATACTGTAAAAGAACTTGATCCTGACAAATTATATGTGACTAAGACACAAAGagattttattcataagtatcgTGATATCATTGAACAAATCAATACCAAAAGATGTCTATGTTGTGATAAAGAACACCCACGGCGTAAGGCTGTAATACAACATTTACAGAAAAATGGGCACAAGGTCCCAAAACATACATGCTACAACTGCGTTGTCACTTTTGGCCATATTGGGGCTTTACTTAGCCATATGCGGTCTAACACATGCACAGATTTGTGGAAAATTATTTATAACGAAAATGGAATCACTGATGATTTAGTTTTAGAAGATGAGCCTAAAGATGCTAAAGTTcaatataaagatatttttaatgcTAGGTCATATGCATGTAAATTATGCCCAGCAAAATTCCAACTTAAACAATTTATTATGAAACATGTGTTGGATGTGCACGAGGATGGTCAATCCCGTGTGCATCTTGCTTGTGTTCACTGCGGGTCTCGATTTAAAGACAAGGCTATATGGAAAAGACATATACGTAACGGAGAGTGTACAGTTTACATCGCGTGTGACCTATGTACAGAAATATTTAGTAACATGCAAGCTTTTAATGACCACGCATTGTCTGTGCATGCTGGGAATTTCGACCAAACTGATAATCAGAACAAATGTGTTGATGGTAGACCAACAGATTGTCCGATTTGTGGTAAGAAGAATAGCAGCTATCCCAATTTGGTTAAACATTTGAAGATAATTCATAGCGAAGAAAAACCTCATTATTGCCAGCATTGTGATTCCAAATTTGAACAAGCTGCTGATCTTAACAAACACATTTATATGGAACATTCTGATAGAACCTTAGGAATGCAGACCAATGAGCCTGACATGTCGCTCGTCAAAGAAGAGGCCGAAGAATATCATTATTCATGCACAGAATGTAACGCCATATTTGAAACCGTTGATGCTTGGACAGATCATCAGGTGGCTGAGCATAATCAAATTGCTCATCATTGTGATCAATGTTATAAGAAATTTTTGAGACCATCGGAACTGGCAGAACACAAAAATACGCATTTGAGAGTGAAGTTCTATCCTTGCAGTATTTGCACTAATTCTTACAGCACGCCGCAAAAACTTTCAGAACACGTCCAACAAGTCCACCCTGGAGTGGGAGCAAGTGCCGCTTTAGATTCTGAATTTTTCTGTGACATTTGTATTAGATCGTTCAAAAGTCGTCAAGCTTATTCAAACCATATGCGTATTCACGCTAAGGTACCTACAACTAATCGGAAACCCGGGGAACCTAAAGGATTTGCGCCGCAAATTATTGGGAAACCGATAAAATCTTTTTCTATGGTACAGCCTGGTTTTGTATCTTTCAAACCTAATTGCAATGTTCCCAATGCACCTTATTCATGTGATATTTGTGGAAAGGGCTTTATGCACAAGAAAAATATTTGGAAGCATAAGAAAGTGCTACATGCAGATGTTGTTGGAGACCGAAATGACAGTGAAGAAAATACTATGCAGGCATCAACTGAAGAAGATGAATACAATTTAGACGAAAATGGTGCTGTACTTTCCACTCCCCAgtttaatagttttaattttactaatttaacaAATAGCTTGCAACCCCAAACTTCTCCTCAAGATCCAACACCCTACTCTTGTGAACTATGCTTTAAACGGTTTCCTCTCAGGACGAGTTTATGGAAACACAAACGAGCTAAGCATGGAATTATTAACGCTAGTGCTAGTGGTAGTCCTGATTCTCAGATGGTGGGAAGTAGTGAAACCGGCAGATCTAGCTGCACTATTTGTAAAATTACTTTTTCAGACAAAAAGTCTTACTACCGTCATAGGAAAAATGTTCACAAGTCATCAGTTCAGATGTGCAAGATTTGTGGTAAGCCTCTAAATTCGACATTGGAGTTATATGAGCATTTAAAAGCTGCTCATGCTAGAGAGTTATTAGGATATAATGAAAACCAAGGTTCCAGTAAGTCACAAGAAATTGTTCAAGAGTTAGACGTAGATTACGAAGGTGACCAGGATTCTATGGATCCTAGCTTAGAATACCAAGCTCGATATCCATGTGATACATGCGGAAAACAATTTGTAGGTTTGCTAGCGCTGCAAAACCATCAATGTATTAATCAAATACAATCTTCCCCCCAAACCTTTGATTGCGAGATTTGTCACAAAAGTTATACTTCCATTTCTGCATTAAAAAGTCACCGTGGATGGCATTTACGGTCACCTGACGGAAAAGCGGCTGCTAACAATACAGGTCTATGGATGCCTCAGCATAAAGTAACAAGCAAAGTTAGCAAACATGAAATTGTCGATCCCTCCCAACTTGCACGGGTGACTCATTCAACTCCTGCAACTGTAGTCAAAAGGAGATTACCACCGGAAGTAGAAGTGACTGTTGTTAACCCAAATAAGAAAATGCGTTCTGATGATTCAGTAGAATTAGAACAGCAGAATTCATCCACTGGAGCTGAAGATAGATATTGCACAATATGTGATAAAGAGTTCACAAAACGAGCGGCTTATCAACGTCACATGGATGAGGTTCATCAACCTAACTCTGTATTCTGTCCCGTTTGTGACAAGAGTTTTACGCGAAAGTCAACCCTGATCGTTCATATGAAGAAACATTACGAAAGTGGGGAAAGTAGTTCAGCTGCAGCTGATCAGATGGAGGATGACGTTCACGCATGTGACCTTTGTGGCGTTCAATATGATAATGAGAGCGCGCTTAGAGCCCACCGAGCAAGGCATCATGGTGATGAATCAGGGGAGTCTGAAGATGATGGAACCAGTGTTCCACCTCCTGGCGAATTCACCTGCGCTCAATGTGGGGATGGAGTCGCCACACCCCGTGATTTAATTGCCCACCGCTCCATGCATGCCACTCCAACAAAATTCTTCTGCAACATTTGCAAAGTTTACTTTGCTCGAGCTATCGACCTCTCGTCCCACACAAGAGCCAGACATGCAGACAATGAAAAGGTTTTTTTCCCATGCGCAATGTGTGACCGTTTTTACATGAACAAGAAGAGCTTACAACGGCACATTGAGATGGCCCACTGA
Protein Sequence: MSVNYDSVCRLCLSSRGELLPIFPTTSSDDSEPPAIASKIKDCVSVQINEDDDLPTNVCKKCMDNVNNWHIFKAVCERTQNKLQSLIKNDGSQLEEVQIKSEPLSDEVYDDGVVIDGSYPDLENASTSSKVQPEGPPILASLGLTPRSDKGMDSEKDEEEDEDEEMNDSSQHYASAPTNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITIKKSQTHMQPKLRPNPFNPKARLMPNPINHKMQLVQKGIPTKIMQQKVVAPPKPIPIKAPKGSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEILVSEPEIINSAPESPETLISEPEIASFQVETILEEPETYNQEQDGEEVDGDTQNNQSQNYDTVDMDSDNEIEIARQQEDAVEGEAKLEEDHQVENEAEEGNEIENLDNGDENNIERNPSDNENDHIDDTADSQDEIQIVNETDGREEDETKEEEDHDERDGEQPEYNHEENEDDDDELPPIAPVVEINEDLQMNSFNSEIHEEEELDETVDPNDTADTVKELDPDKLYVTKTQRDFIHKYRDIIEQINTKRCLCCDKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDAKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVHLACVHCGSRFKDKAIWKRHIRNGECTVYIACDLCTEIFSNMQAFNDHALSVHAGNFDQTDNQNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHSEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGMQTNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCYKKFLRPSELAEHKNTHLRVKFYPCSICTNSYSTPQKLSEHVQQVHPGVGASAALDSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIIGKPIKSFSMVQPGFVSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADVVGDRNDSEENTMQASTEEDEYNLDENGAVLSTPQFNSFNFTNLTNSLQPQTSPQDPTPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSPDSQMVGSSETGRSSCTICKITFSDKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKAAHARELLGYNENQGSSKSQEIVQELDVDYEGDQDSMDPSLEYQARYPCDTCGKQFVGLLALQNHQCINQIQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEIVDPSQLARVTHSTPATVVKRRLPPEVEVTVVNPNKKMRSDDSVELEQQNSSTGAEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESGESSSAAADQMEDDVHACDLCGVQYDNESALRAHRARHHGDESGESEDDGTSVPPPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARAIDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01155687;
90% Identity: iTF_01154413;
80% Identity: -