Psmi002649.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius smintheus
Gene Symbol
Hr39
Assembly
GCA_036936625.1
Location
JAUPFT010000001.1:52248954-52268726[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2 9.2e+04 -7.9 11.1 98 159 239 302 36 332 0.69
2 3 5.8e-08 0.0027 19.5 0.1 1 20 414 433 414 441 0.91
3 3 1.8e-65 8.3e-61 208.9 0.0 163 408 475 730 444 730 0.83

Sequence Information

Coding Sequence
ATGAAAGGTCAATTCTCGTATAGTTCGAGCGGAGTACGTATCAGCGTGTCTTCGGTACCTCACGATGAAGACTCCACTGATGCCGAAATCTCCAAGATCGACTTTACACAACATCAATATGAGgtCAACATGCGGAATAAAAAGAAGCGTTCTTCTAGTGGCGTTCAATGTGACGGTCAAAGTAACGAACGTGAGCGCCCCATGTCATGGGAGGGTGAGCTGTCCGACTCCGAAATggtcattgacaccagcgtcaataaCGATGAGAACAGCAGTTCCATTGACATGCAGTCATCTCGCGACTCCATCGATACTCTCCGAAACGTCACTATCAAAACTGAACCTCATAAGCCGGAAGCATTTCAGAGCTTAGACGATCAAAGGGTATTGGATCTAAAATACTCCATGCCGCTTCAGTCGCATCAACGAAGCCTCAGTATGAATAGGATATCAGTTCTGACAGACAACACGTCCCTTTCACTCTCTCGGCGGCCTTCATCTCCTGCGAACAGCGCCAAGTCTCTGGTTCTGAACGACCAGACGACATTGCCGCTGATGACGCCCAACGTGGTTGGAGAGGCACAGAACTTGACTATAAAGAAAGAAAATCAATTATCAGAGTTAAAATGCGAAGCGGGTATGGGAATGGAAAAGTTACTGGGGCTGCATGGATCACCCCTGCTCGGGCGACTTCCTCGCGTGCAGTCCAGCGCCAGCACCGACTCCGCTGTGCACTCTATGTACACGCATAGCGTGTACAGCAGCCCGTCCGCGAGTCCGCGTCCGGCGCGTCACTATACGCCGTCCTTGTCGCGCAACAACAGCGACGCCTCGCACTCTTCCTGTTACTCGTACAGCTCCGAGTTCTCACCCACTCACTCGCCAGTACAGAGTCGGCAGCCACACGTAGTGTACCGCGAGGCGTCGGCAGTGTTCCCTGCATCGCCGGCGCACGACGAAGATGCTGACGCGGCCGACGAGCGACTGCACCACCACCAGGGCATCAGTAGACAGCAGCTTATCAACAGTCCGTGCCCAATCTGCGGGGACAAGATCAGCGGCTTCCACTACGGGATATTCTCGTGTGAGTCGTGTAAGGGCTTCTTCAAGCGAACTGTGCAAAACAGAAAGAATTACATGTGCCTCCGCGGCGGCAACTGCCCCGTCACCGTGGCTACGCGCAAGAAGTGTCCTGCTTGCCGCTTCGACAAGTGCCTCGGTTGCGGGATGAAGCTAGAAGCAATacgcgaggatcgaacccgaggCGGTCGCTCGACGTACCAGTGCTCGTACTCACTATCGGGCGCCGCGTCCACGGGCTCGTTACTGTCCGCGCACGTGCCGACAACACTACGGCATGCGTCCAGCCTCACCTGCGTGAACGGTCCAGGGTCATACAGCAGTAGAGGGGAACCCAGCAGCAGTCGACTGACACCTGACATTCCACCATTATTGCAGGAGATAATGGACGTGGAGCACCTGTGGCAGTACAACGAGTCCGAGTTGAGTCGTTTGGGCAAGTCGTCCGGCGGCGCCAACCCTCTACTAGCGGCGAGTGGGATCAACCCGCACACCTCCAGTGCGGACCTGCTCGCTGACTTGTGCCACATCGCAGACCATCGCCTCTACAAGATCGTGAAGTGGTGCAAGAGCTTACCACTCTTTAAGAACATATCCATCGACGACCAGATCTGCCTGCTGATCAACAGTTGGTGCGAACTGTTGGTGCTGTCGTGCTGCTACCGCGGAGTCAGCACGCCCGGGGAAGTGCGCGTGGGGGGCGGTCGCGGCATTACACTGCATCAAAGTGCTAAGTTCGGTTTGACGCCGTGTATAGAACGCATGCTGAGCTTCACCGACCACTTGCGGAGGTTGCGGGTCGACCGGTACGAGTATGTCGCACTCAAGGTTATCGTACTGCTCACGTCAGACGCACCCGAGCTGCGTGAAGCGGAGAAAGTACGAGCGTCCCAAGAGAAAGCGTTGGCGGCCTTGCAGGCGTACACAGCTGCGCACTCGCCGGATACTCCCGCGAAGTTCGGCGAGCTGCTGTTGCGTATACCCGAGCTGCAACGAACGTGCCAGTTCTTCATGCAAGTTGGTAAAGAAATGCTCAACCCCGCGAATAAGAGTAAAGATGGCGACGGTCCAAGCTTCAACCTCCTGATGGAATTACTGAGGGGTGATCATTGA
Protein Sequence
MKGQFSYSSSGVRISVSSVPHDEDSTDAEISKIDFTQHQYEVNMRNKKKRSSSGVQCDGQSNERERPMSWEGELSDSEMVIDTSVNNDENSSSIDMQSSRDSIDTLRNVTIKTEPHKPEAFQSLDDQRVLDLKYSMPLQSHQRSLSMNRISVLTDNTSLSLSRRPSSPANSAKSLVLNDQTTLPLMTPNVVGEAQNLTIKKENQLSELKCEAGMGMEKLLGLHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRPARHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQSRQPHVVYREASAVFPASPAHDEDADAADERLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYSLSGAASTGSLLSAHVPTTLRHASSLTCVNGPGSYSSRGEPSSSRLTPDIPPLLQEIMDVEHLWQYNESELSRLGKSSGGANPLLAASGINPHTSSADLLADLCHIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLHQSAKFGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTAAHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKSKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00958006;
90% Identity
iTF_00922930;
80% Identity
iTF_01159514;