Psmi073991.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000028.1:14091862-14116021[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.9e-12 3.5e-08 35.2 0.1 7 49 21 65 17 68 0.87 2 21 1.4e-07 0.0026 19.6 0.1 22 49 66 92 63 94 0.84 3 21 1.4e-07 0.0025 19.7 0.1 22 49 93 119 90 121 0.84 4 21 1.4e-07 0.0025 19.7 0.1 22 49 120 146 117 148 0.84 5 21 1.2e-07 0.0021 19.9 0.1 22 49 147 173 143 175 0.83 6 21 1.3e-07 0.0024 19.7 0.1 22 49 174 200 171 203 0.84 7 21 1.1e-07 0.002 20.0 0.1 22 49 201 227 197 230 0.84 8 21 1.1e-07 0.002 20.0 0.1 22 49 228 254 224 257 0.84 9 21 1.3e-07 0.0024 19.7 0.1 22 49 255 281 252 284 0.84 10 21 1.4e-07 0.0025 19.7 0.1 22 49 282 308 279 310 0.84 11 21 1.1e-07 0.002 20.0 0.1 22 50 309 336 306 349 0.85 12 21 9.4e-08 0.0017 20.2 0.1 22 49 361 387 342 390 0.82 13 21 1.2e-07 0.0021 19.9 0.1 22 49 388 414 384 416 0.83 14 21 1.3e-07 0.0024 19.7 0.1 22 49 415 441 412 444 0.84 15 21 1.4e-07 0.0025 19.7 0.1 22 49 442 468 439 470 0.84 16 21 2e-07 0.0037 19.1 0.1 23 49 470 495 468 497 0.84 17 21 1.2e-07 0.0021 19.9 0.1 22 49 496 522 492 524 0.83 18 21 1.2e-07 0.0021 19.9 0.1 22 49 523 549 519 551 0.83 19 21 1.2e-07 0.0021 19.9 0.1 22 49 550 576 546 578 0.83 20 21 1.6e-07 0.003 19.4 0.1 22 49 577 603 575 606 0.85 21 21 5.9e-07 0.011 17.6 0.1 22 48 604 629 601 633 0.83
Sequence Information
- Coding Sequence
- ATGGGCGCGGCGCCGGGAATTCGCGGACGGCGCTCGACGATGGAGATGTCGTCGCCGCTGCTGCGAGCGCCGCTGGAGCGCGGCTGGCGGCGCGAGCTCGTGTACCGCGCCGCGCTCGACGCGCACTCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGTTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACAAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGTTCCACCAGGGAGGTACGTAGTGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGTTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGTTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGTTCCACCAGGGAGGTACGTAGTGCCGCACCGCGACGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAATGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGAGTGACATTCTAAGTTCTGAATTATGTGATAATCGTTATGACGTCATGCGTTTAGACCGTAACTTACCCCAAACACAGAAAAAAACTGGTGGTGGTATAATGGCTTGCATAAGGAGCGAATATGGAGCTGGACAAATGCATGGTTTTAGTTCTAACCTTAATACTGAGTTACTCTGTATAACGTTACCTGCAGGTGAATTGGGAACTAAATGTAACCTAAATATTATTTTGGTATATATTCCTCCTGACTCATATAATATACCATCGCAACTAAATGAAGTAAACAGCTTTGTCACATCATTAACTGAGCGGTACCCAGAGGACACATGCCTATTGGTGGGTGACTTTAATCTTCGTTGCTTTAAATGGCAGGATGGTCATCACGAATTACTTCATAACATGAGTATGGAAATTCAGGATGCAGCACTATCGCTTGCGGAGGGTATGACTTTCTTGGGCTTAAAacaatttaatagtattttaaatgGTAACAGACGTACACTGGACTTAGTGTTCTGCAATCTAAACACAGAAGTTCTAAGATGTTCTTCCCCTCTTTTGACAGAGGACAAACATCACCCTTCTTTGTATATTGACATCACTGATCTATTTGTGACCCCTTTCAAAGAAGTCGTCACACCGCGACGTGATTTTTACAAATGTGATTATGTTGCAATTAATAACTTCTTTATACAAACTGATTGGGATGGTACGCTGCAGAATAAATCGATAGACGTGGCTACGACATTATTTTACAGTAAATTAGAAGAATGTCTTGATCAATTtgtacctttaaaaaataaaactagcacTAAAGAATACTATCCCATTTGGTATAACTCTGCTTTAATAAAAGTCATACGTGAAAAGAGCAAGATACATAACAAATGGAAACGCTTTAGGAATCCTCGAGATTACGATGAGTTTGCTTTGCTACGTTCTCGTGAAAAATTACTTCAGCAACAATGTTTTAATAAGTATATCAACTGCATAGAGGATAGGATTCATCTCACTCCCAAGGCTTTTTGGTCATACGTTAAATCGAAGCGTGGTGGTTCTCGATTCCCCAAGCAATTAAGTTACCAGGGTAAGTCCATTACTGATGGCAATGCTATATGTActgaatttaataattactttaagagtaCGTTTTCTGGTTCTTGCCCTCAGAGTGCTAGATCTGTAAATGGTGACGGTGAATGTTGCACCTTTGACACAATATCTGGTCTAACCGTAACAAAGGATGACGTTTTTAATATGCTTAAGACGCTAGATGTTTCTAAAGGCCCTGGGTGTGATGGAGTAGCACCCGTTGCCGAGAATTTAGCAGGAACTGGTCTAACTTTAGAAAATTTTTCCTTCTTCAAAGAACCACTTGGTGTGGATGATCCTGATAAAGAAATTATACGAGATGCTAAATTAATGCGTCGCGTGGAGTCTCCAGTCCCAGTTCCTGTGGCGCCCACGATAGAAGGCAAGCGGACGCCGAAGCCCAAACCTCCCAAAGGTGCCAGCCCAGAGCCAGCTACACCAAAGTCACCACCTGCTAAAATCAAGGTGAAGTCTGTAGGTTCACGTTTGAGTAACAATGGAACCCCTCCAGCTGCCAGTGTGCAAAAACAGCTGCGGCGCACGCAGTCCACAACTGCGACAGCTGCCAGCCCCGCCCCCGCTTCCTCTCCTGCCCCCGCTACCGCTAACGCTGTGGACAACAACAACACTGCTGCCTGGAAGAAACCTAGCTCGCTGTCATCTATGACTGCTTCATCACCATTCGCCAGGCGCAATCGCAGTGAATACCATAAATTTCAAGAACATCTCAATATTAACAAGCACATACACATAACAAGCACAGcatgTTTGTACCTGTGTTGTCGATTTCCGGCGCAGAACCCGCAGCAGGTGGTGCAGCCGTGCTCGATGTCGTGCGGGCGCGGGGCCGTGCCGTCGCTGGCGTGCGTCGCTTGCCTGTGCCTGTACCACCCCGCCTGCGCCGGCCTGCCGCCCGCACTGCTGCAGCACCAACACTTCCTGTGCAAGAACTGCCGTAAAACATCATCACCACCGTTAGAGCCACCTCCCCTGACGCACAAGTCTGGGGCCACAGCCAGTGCGGCGAGCGGAGCGGTAGCGGCAGCGGGGGCGGGGAGCGGGGCGGTTGCAGCGAGGCGACCCGCCCCGGTGTCCATCCCACCAACCATCTCAGCTAAAGTGCGACCTGACAAACGAGTCATGTTGCGGATGAAGGTGGCAGGCGGTGGCGCGGACGGGTCTCGTGTTTGGGCGGTAGCAGCGTCCACTGCTGGCAGCGGAGGGGCCGGGGCCACGAGCGGAGCGGTTGGGGCCACGAGCGGAGCGACAGGGGCCACAAGCGGAGTGGGCGGCGGGGCCACAAGCGGAGCGGGTGGCGGGGCCACAAGCGGAGCGGGCTGTGGACCTCCATCAGGCGTCAGGCCGACACTACCACAATCTCTCGCAGTACTCAACGGCAGGCGCTTCATCGTAGTACCTCGCTCGCTTGTGAACTCCGATCAACACTGA
- Protein Sequence
- MGAAPGIRGRRSTMEMSSPLLRAPLERGWRRELVYRAALDAHSRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAATPTSTTTRRRARSCAPPGREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTRESDILSSELCDNRYDVMRLDRNLPQTQKKTGGGIMACIRSEYGAGQMHGFSSNLNTELLCITLPAGELGTKCNLNIILVYIPPDSYNIPSQLNEVNSFVTSLTERYPEDTCLLVGDFNLRCFKWQDGHHELLHNMSMEIQDAALSLAEGMTFLGLKQFNSILNGNRRTLDLVFCNLNTEVLRCSSPLLTEDKHHPSLYIDITDLFVTPFKEVVTPRRDFYKCDYVAINNFFIQTDWDGTLQNKSIDVATTLFYSKLEECLDQFVPLKNKTSTKEYYPIWYNSALIKVIREKSKIHNKWKRFRNPRDYDEFALLRSREKLLQQQCFNKYINCIEDRIHLTPKAFWSYVKSKRGGSRFPKQLSYQGKSITDGNAICTEFNNYFKSTFSGSCPQSARSVNGDGECCTFDTISGLTVTKDDVFNMLKTLDVSKGPGCDGVAPVAENLAGTGLTLENFSFFKEPLGVDDPDKEIIRDAKLMRRVESPVPVPVAPTIEGKRTPKPKPPKGASPEPATPKSPPAKIKVKSVGSRLSNNGTPPAASVQKQLRRTQSTTATAASPAPASSPAPATANAVDNNNTAAWKKPSSLSSMTASSPFARRNRSEYHKFQEHLNINKHIHITSTACLYLCCRFPAQNPQQVVQPCSMSCGRGAVPSLACVACLCLYHPACAGLPPALLQHQHFLCKNCRKTSSPPLEPPPLTHKSGATASAASGAVAAAGAGSGAVAARRPAPVSIPPTISAKVRPDKRVMLRMKVAGGGADGSRVWAVAASTAGSGGAGATSGAVGATSGATGATSGVGGGATSGAGGGATSGAGCGPPSGVRPTLPQSLAVLNGRRFIVVPRSLVNSDQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -