Psmi014194.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000005.1:30945822-30946289[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-08 8.5e-06 27.7 0.0 5 41 29 66 26 68 0.93
Sequence Information
- Coding Sequence
- ATGAATAATACTAAGcctaaaaatacaagaaaaagaAATAGGAAATTAGAATCGAGAGCATATAGAAATTATGCAGAGAAAATGTTAGAATTAGCGGTTGAAATGGTAGAAAATAGCAGGATGTCAAGTCGGGAGGCAGAAAAGAGGTTCGGAATCCCTCGACGGACGATATtgaacaaagttaaaaaaaatcacttgaaATCAGCTGGAGGACAAAAGAAACTCACTGACGAAGAGGAAGAAAAACTGGCAAATGTGTTGTTAGCTTCAGCAGATTACGGCAGTCCCATGTCGAAAATGGATATAAAAATGTTGGTCTATAAATACGTAGAAAAAAATTCACGGACTGATTTGTTCGATGGCAAATTACCCAGTGATACATGGGTGGAAGGATTTTTAAGCAGACATCGTTCGATATTGACCATTAGAACaacccaaaatataaaaaaaaagtacggGCCGAGATAG
- Protein Sequence
- MNNTKPKNTRKRNRKLESRAYRNYAEKMLELAVEMVENSRMSSREAEKRFGIPRRTILNKVKKNHLKSAGGQKKLTDEEEEKLANVLLASADYGSPMSKMDIKMLVYKYVEKNSRTDLFDGKLPSDTWVEGFLSRHRSILTIRTTQNIKKKYGPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00375120;
- 90% Identity
- iTF_01153874;
- 80% Identity
- -