Ctra027788.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991035.1:7836923-7837381[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-09 1.4e-06 29.4 0.0 2 40 21 60 20 62 0.93
Sequence Information
- Coding Sequence
- AtgaataacacaaaaaaaaatagaagaataTTAGGATCGAGAGAATACAGAAATTATTCAGATGAAATGTTAGAGTTAGCGGTTGACATGGTAAAAAATAACAGGATGTCAAGTCGGGAGGCAGAAAATAGGTTCGGGATTCCTCGACGGACGATATTgaacaaagttaaaaaaaatcacttgaAACCAGCTGGAGGACAAAAGAAACTCACTGACGAAGAGGAAGGAAAACTGGCAAACGTGTTCTTAACTTCAGCAGATTACGGCAGCCCCATGACGAAAATGGATGTAAAAATGTTAATCTataaatatttagaaaaaaattcacGAACTGATTTGTTCGATGGCAAATTACCCAATGATACGTGGGTGGAGGGATTTTTAAACAGACATCGTTCAAAATTGACCATCACAATGACTCGAAATATAAAAAAGGTAGGTGAGAAAGGATTAGAATAA
- Protein Sequence
- MNNTKKNRRILGSREYRNYSDEMLELAVDMVKNNRMSSREAENRFGIPRRTILNKVKKNHLKPAGGQKKLTDEEEGKLANVFLTSADYGSPMTKMDVKMLIYKYLEKNSRTDLFDGKLPNDTWVEGFLNRHRSKLTITMTRNIKKVGEKGLE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01230503; iTF_00906990; iTF_00677557; iTF_01153874; iTF_01158811;
- 90% Identity
- -
- 80% Identity
- -