Psmi034614.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000012.1:40753963-40754544[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-08 5.6e-06 28.2 0.0 2 40 15 53 14 58 0.91
Sequence Information
- Coding Sequence
- ATGGGGCGATACAAATGCAAGGGCATTCGCGGTAATTGGGTGGAAGATGATATGAAGTTCGCTATGTCTGCTGTAATGAGAGGGGTTATGAGAGTGAACACAGCTGCAAAGAGGTTTAATGTACCAAAGCGGACTCTGAGACGATATTTGGCAGAAAACAAAAACACTAAATCCACCTTGGGTAGAAAACCATTGTTAAATTCGGATCAAGAAAACGATTTGAAATCCCGCATTATTCGACTTTGCAGCGTTGGTTACCCACTAACACGTGTATTATGTTCATGTGTTAAAACGTTCTGTAATGAACATAACATTTTATCCAAAAGTCAAGGAGTTATGATTGGACGAGATTGGTTGAGGGGATTTTTAAGACGGCACCCTAATATCAGTAAACGTAAAGCCCAAAATTTAAATCCCGCCAGAGCTCAAAAGCTTAATAAGGCAGTAGTGTCTGATTACTTTGCGAAATTAAAggatttaatgaaaaaatatgaCTTAATGAAGAAACCAGAACGGATTTATAATATTGATGAAAAAGGTTGTCAATTAAATTTACACAAAACTCCACAAGTTCTAGCATAA
- Protein Sequence
- MGRYKCKGIRGNWVEDDMKFAMSAVMRGVMRVNTAAKRFNVPKRTLRRYLAENKNTKSTLGRKPLLNSDQENDLKSRIIRLCSVGYPLTRVLCSCVKTFCNEHNILSKSQGVMIGRDWLRGFLRRHPNISKRKAQNLNPARAQKLNKAVVSDYFAKLKDLMKKYDLMKKPERIYNIDEKGCQLNLHKTPQVLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00162575; iTF_01158870; iTF_00640242;
- 90% Identity
- iTF_01158870;
- 80% Identity
- -