Esim024659.2
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383944.1:5576892-5577581[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-08 2.3e-05 24.8 0.1 2 43 15 56 14 58 0.94 2 2 5.2 2.2e+03 -0.7 0.0 17 24 130 137 129 138 0.85
Sequence Information
- Coding Sequence
- ATGGGGCGATATAAACGGAAAGGTGTTCGAGGTAATTGGGTGGAAGATGATATGAAGTTAGCAATATCTGCTGTAAAGAGAGGCGCTATGAAAGTGTACACAGCTGCAAAGAGATTGAATGTACCAAGACGGACTCTGAGACGATATTTGGCTGAAAATATAAACACTAAATCGACCTTAGGTAGAAAACCATTGTTAAACTCGGATCAAGAAAATTATTTGAAATCCCGCATTATCCGACTTTGCAACGTTGGTTACCCACTAACACAGCGAGTATTACGTTCATGTGTTAAAACGTTCTGTAATGAAAAGAACATTTTAGGAAAAAGTCAAGGAGTAATGATCGGACGAGATTGTTTAAGAGGATTTTTAAGACGTCATCCTAATATCAGTCAACGTAAAGCCCAAAATTTAAATCCCGCTAGAGCTCAAAAGCTTAATAAGGCTGATTACTTTGCGAAATTAAAGGATGTAATGGAAAAATATGATTTAATGAAGAAACCAGAACGAATTTTCAATATTGATGAAAAAGGTTGTCAATTAAATTTACACAAAACTCCACAGGTTCTAGCAGAACGCGGAACAAAGAGAGTACACATAGTGGCAGCTGAACATGGAGAATCAGTGACCGTATCTTGTGGTAATGCATTAGGGCACGCGATACCATCCATGATTTTATTCAAGGATTGA
- Protein Sequence
- MGRYKRKGVRGNWVEDDMKLAISAVKRGAMKVYTAAKRLNVPRRTLRRYLAENINTKSTLGRKPLLNSDQENYLKSRIIRLCNVGYPLTQRVLRSCVKTFCNEKNILGKSQGVMIGRDCLRGFLRRHPNISQRKAQNLNPARAQKLNKADYFAKLKDVMEKYDLMKKPERIFNIDEKGCQLNLHKTPQVLAERGTKRVHIVAAEHGESVTVSCGNALGHAIPSMILFKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158797;
- 90% Identity
- -
- 80% Identity
- -