Psmi036588.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000013.1:23690373-23694933[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-08 4.2e-06 28.6 0.0 4 42 20 58 17 61 0.92
Sequence Information
- Coding Sequence
- ATGCCGTTTCAATACAAACCCCAAGGCACTACGCGTTGCAGAAAATTTACAAAGCGTGACCTTGAGCAAGCTATTAGTGAGATTCAGGGAGGTGCTTCTATTAGAAAAACAGCCattaaatatgacattgataGAACGACCCTAAGAAGGAACCATGTTCGCGGTGAAGcgacattaaataaaatagaagaaaaaggTAGTCAGTACAAAAGCTTGCAGATTTTTGACAATAAGGAAGAAAAGCAATTAGTAAACTACCTTTTGGCATGCAGTAAAATGCACTATGGACTGACGAGAAAACAAGCCATGCAATTAGCCTTTGATTATGCtctagcaaataataaaaaaatacctcaAAGTTGTACAAATAACAATTTTGCTGGAAAAGATTGGTTCCGAGGTTTCTTAGCTAGAAACCCGGAAATAAGCTTAAGAggaaagaCGAGATATCAATGCGTCAATGCATTAGGTTCTGGACATTTTGGTTAG
- Protein Sequence
- MPFQYKPQGTTRCRKFTKRDLEQAISEIQGGASIRKTAIKYDIDRTTLRRNHVRGEATLNKIEEKGSQYKSLQIFDNKEEKQLVNYLLACSKMHYGLTRKQAMQLAFDYALANNKKIPQSCTNNNFAGKDWFRGFLARNPEISLRGKTRYQCVNALGSGHFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158785; iTF_01158774; iTF_01158874; iTF_01158782; iTF_01158855; iTF_01158800; iTF_01158873; iTF_01158849; iTF_01158836;
- 90% Identity
- iTF_01158874;
- 80% Identity
- -